BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0103.p (596 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134093438|ref|YP_001098513.1| phosphoenolpyruvate-protein pho... 868 0.0 gi|134094577|ref|YP_001099652.1| phosphoenolpyruvate synthase [H... 87 2e-18 >gi|134093438|ref|YP_001098513.1| phosphoenolpyruvate-protein phosphotransferase [Herminiimonas arsenicoxydans] Length = 582 Score = 868 bits (2242), Expect = 0.0, Method: Compositional matrix adjust. Identities = 432/582 (74%), Positives = 498/582 (85%), Gaps = 2/582 (0%) Query: 1 MASFSLHGIAVSQGIAIGRAHLMAPAALDVKHYLIAAPQVEAEVARLKSAVKAVHQELHT 60 M SF+LHGI VS+GIAIGRAH++APAALDV+HYLIA QVEAEVARL+ A+ VH EL Sbjct: 1 MTSFTLHGIPVSRGIAIGRAHILAPAALDVQHYLIADDQVEAEVARLQDAITLVHAELQN 60 Query: 61 IRTELPKDAPPELGAFIDVHSLILSDPLLAEVPQDIIRHRYYNAEWALVTQIEELSAQFD 120 I ELP DAP ELGAFIDVH+LILSDP+++E+P DIIR RYYNAEWALVTQIEELSAQF+ Sbjct: 61 IWNELPADAPAELGAFIDVHALILSDPMISEMPLDIIRSRYYNAEWALVTQIEELSAQFE 120 Query: 121 DIEDPYLRERKADIQQVGERILKVLTGSAGHLPPT--GEAAANIIVVAHDISPADMLQFR 178 +IED YLRERK+DIQQVGER+LK LTGSA LP E A++IVVAHDISPADMLQFR Sbjct: 121 EIEDTYLRERKSDIQQVGERVLKALTGSANILPKGEGAEGGASMIVVAHDISPADMLQFR 180 Query: 179 ESAFAGFVTDLGGPNSHTAIVARSLAIPAAVGMHNASVLVKHDDVLIIDGDAGVVIVDPS 238 AF+GF+TD+GG NSHTAIVARSL IPA VG+ NAS L+ D LIIDGDAGVV+V P+ Sbjct: 181 NRAFSGFITDVGGQNSHTAIVARSLDIPATVGVSNASRLIDQGDWLIIDGDAGVVVVAPN 240 Query: 239 PLVLAQYRARQERLLRERKKLSRLKKTPAITQDGEPITLLANIELPNDAAPAFEAGAMGI 298 +VL QYR +Q R +RERKKL +LKK P++T DG PITLLANIE P+D A A +AGA GI Sbjct: 241 SVVLDQYREKQARQMRERKKLGKLKKMPSVTLDGTPITLLANIEFPDDCAHAMDAGAHGI 300 Query: 299 GLFRSEFLFMGRAGHLEKFPSEDEQFESYKQAVIAMKGRVVTIRTLDVGADKPLDADEET 358 GLFRSEFLFMGR GH + PSEDEQFESYK+AVIAMKGR VTIRTLD+GADKP+D E+T Sbjct: 301 GLFRSEFLFMGRTGHANQLPSEDEQFESYKKAVIAMKGRPVTIRTLDIGADKPMDFAEQT 360 Query: 359 ALNPALGLRAIRYCLSEPQMFLTQLRAILRASAYGPIKLLVPMMAHAFEIDQTLSMIEQA 418 ALNPALGLRAIR+CLSEPQMFLTQLRAILRASA+GPIKLLVPM+AHAFEIDQTL MIEQA Sbjct: 361 ALNPALGLRAIRFCLSEPQMFLTQLRAILRASAFGPIKLLVPMLAHAFEIDQTLLMIEQA 420 Query: 419 KQQLRDRKQKFDEDIPIGAMIEIPAAALALPLFIKRLDFLSIGTNDLIQYTLAIDRVDHE 478 K QLR++K KFD ++P+GAMIEIPAAAL+LP+FIKRLDFLS+GTNDLIQY LAIDRVDHE Sbjct: 421 KAQLREQKIKFDAELPVGAMIEIPAAALSLPMFIKRLDFLSLGTNDLIQYALAIDRVDHE 480 Query: 479 VAHLYDPLHPAVLFLLSTVISQGRKAGIPVSVCGEMAGDLKWTRLLLGMGLLEFSMHPSQ 538 VAHLY+PLHPAVL+L+ST I+ KAGIP+SVCGEMAGD++ TRLLLGMGL EFSMHPSQ Sbjct: 481 VAHLYNPLHPAVLYLISTTIAMAAKAGIPISVCGEMAGDVQMTRLLLGMGLREFSMHPSQ 540 Query: 539 ILSVKNEILNSDLRLLEPQVKKVLRATEPAAINAAMAQLQAL 580 +L+VKNEILNSDL L P +K++R+ E I A+ +L+ + Sbjct: 541 LLAVKNEILNSDLNALTPLTRKIVRSFEQEEIIEAVERLRVM 582 >gi|134094577|ref|YP_001099652.1| phosphoenolpyruvate synthase [Herminiimonas arsenicoxydans] Length = 812 Score = 87.4 bits (215), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 102/406 (25%), Positives = 172/406 (42%), Gaps = 79/406 (19%) Query: 183 AGFVTDLGGPNSHTAIVARSLAIPAAVGMHNASVLVKHDDVLII---DGDAGVVIVDPSP 239 + +T+ GG H AI+AR L +PA VG +A+ L+K ++ + +GD G V Sbjct: 428 SAIITNRGGRTCHAAIIARELGVPAVVGCGDATELLKDGALVTVSCAEGDEGKV------ 481 Query: 240 LVLAQYRARQERLLRE--RKKLSRLKKTPAITQDGEPITLLANIELPNDAAPAFEAGAMG 297 Y E + E R L L P+ + N+ P A G Sbjct: 482 -----YDGLLESEVTEIARGDLPEL-----------PLKITLNVGNPQLAFDFQSIPNAG 525 Query: 298 IGLFRSEFLFMGRAG----HLEKFPSEDEQFESYKQAV------------------IAMK 335 +GL R EF+ G + ++P+ D + ++V IA Sbjct: 526 VGLARLEFIINNNIGVHPKAILEYPNIDPDLKKAVESVARGHASPKAFYIDKLAEGIATI 585 Query: 336 G-----RVVTIRTLDVGADK--------PLDADEETALNPALGLRAI-RYCLSE-PQMFL 380 G + V +R D +++ + DEE NP LG R + RY + + F Sbjct: 586 GAAFWPKPVIVRLSDFKSNEYKKLIGGSRYEPDEE---NPMLGFRGVARYLAPDFAEAFE 642 Query: 381 TQLRAILRAS---AYGPIKLLVPMMAHAFEIDQTLSMIEQAKQQLRDRKQKFDEDIPIGA 437 + +A+ R ++++VP + + ++ + ++ AK L+ + + + I Sbjct: 643 MECKAMKRVRDDMGLTNVEIMVPFVRTLGQAEKVIDLL--AKNGLK----RGENGLRIIM 696 Query: 438 MIEIPAAALALPLFIKRLDFLSIGTNDLIQYTLAIDRVD--HEVAHLYDPLHPAVLFLLS 495 M E+P+ A+ F+ D SIG+NDL Q TL +DR +A +D PAVL L S Sbjct: 697 MCEVPSNAILAEEFLNYFDGFSIGSNDLTQLTLGLDRDSGMEILAADFDERDPAVLALFS 756 Query: 496 TVISQGRKAGIPVSVCGEMAGDL-KWTRLLLGMGLLEFSMHPSQIL 540 I+ RK G V +CG+ D + L+ G+ S++P ++ Sbjct: 757 RAIAACRKQGKYVGICGQGPSDHPDFAEWLMKEGITSLSLNPDSVI 802 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.321 0.136 0.383 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 1,038,654 Number of extensions: 42138 Number of successful extensions: 138 Number of sequences better than 1.0e-08: 2 Number of HSP's gapped: 135 Number of HSP's successfully gapped: 2 Length of query: 596 Length of database: 1,000,347 Length adjustment: 87 Effective length of query: 509 Effective length of database: 713,682 Effective search space: 363264138 Effective search space used: 363264138 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 131 (55.1 bits)