BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0101.p
         (136 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093436|ref|YP_001098511.1| putative phosphotransferase, ma...   214   2e-57

>gi|134093436|ref|YP_001098511.1| putative phosphotransferase,
           mannose/fructose-specific component IIA family protein
           [Herminiimonas arsenicoxydans]
          Length = 135

 Score =  214 bits (544), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 106/133 (79%), Positives = 119/133 (89%)

Query: 1   MVGILLLTHAPLGQAFVAAATHVFRGRPERMEAIDVIADQNPAEVQKLAIEAVERLDDGS 60
           MVGILL+THAPLGQAF+AAATHVFR RPER+EAIDV ADQ+  EV++LA +A+  LDDGS
Sbjct: 1   MVGILLMTHAPLGQAFIAAATHVFRARPERLEAIDVTADQDTHEVERLAKQAIAGLDDGS 60

Query: 61  GVLVITDVMGGTPSNCTGFLCGLGNVQVIAGISLPMLLRALTYRNDTLDVVVEMALAGGQ 120
           GVLVITDVMGGTPSNCT  LC + NV VIAGISLPMLLRA+TYR DTLDVVVEMALAGGQ
Sbjct: 61  GVLVITDVMGGTPSNCTLGLCNVENVAVIAGISLPMLLRAITYRRDTLDVVVEMALAGGQ 120

Query: 121 NGAVRIDNRIRVA 133
            GAVR+DNR+R+A
Sbjct: 121 GGAVRVDNRVRLA 133


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.322    0.138    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 275,142
Number of extensions: 11078
Number of successful extensions: 33
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 33
Number of HSP's successfully gapped: 1
Length of query: 136
Length of database: 1,000,347
Length adjustment: 73
Effective length of query: 63
Effective length of database: 759,812
Effective search space: 47868156
Effective search space used: 47868156
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 124 (52.4 bits)