BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0098.p (511 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134093433|ref|YP_001098508.1| ammonium transporter [Herminiim... 567 e-163 gi|134095617|ref|YP_001100692.1| putative ammonium transporter [... 104 1e-23 >gi|134093433|ref|YP_001098508.1| ammonium transporter [Herminiimonas arsenicoxydans] Length = 466 Score = 567 bits (1462), Expect = e-163, Method: Compositional matrix adjust. Identities = 326/511 (63%), Positives = 384/511 (75%), Gaps = 46/511 (9%) Query: 1 MSMKKMFSGVLAIGALLLAVGFTAPAQAQDAPKPEAAAAAAAAPAAAAPAAPKADAAAPA 60 MS+KK+F+ LA GALL+AVGF AA A A A A A+ A APA Sbjct: 1 MSIKKIFASALATGALLVAVGF-------------AAPAIAEEAATAPAASATVAAPAPA 47 Query: 61 AAAPAAPAAAAAAPAPVPNKGDTAWMLISTAFVILMTLPGLGLFYGGLVRSKNMLSVLMQ 120 A A AA AAPAPV N GDTAWML ST VILMT+PGL LFYGGL RSKNMLSVLMQ Sbjct: 48 ATTEAPATAAPAAPAPVLNTGDTAWMLTSTMLVILMTIPGLALFYGGLGRSKNMLSVLMQ 107 Query: 121 CFVIFSLIYILWFVYGYSIAFTEGNAFFGGFDRLFLHGLTGDSNTGTFSKGVVIPELSFV 180 FV+F+LI +LW +YGYS+ F G +F+G F++LFL G+ D+ +GT IPE FV Sbjct: 108 VFVLFALITVLWAIYGYSMVFAGGGSFYGTFEKLFLGGIKPDTLSGT------IPEYVFV 161 Query: 181 AFQGAFAAITVALIIGSFAERVKFSAVILFSILWFTFSYLPMAHMVWFWPGPDAFTDAAA 240 AFQ FAAIT ALI+G+FAER+KF+AVI FS+LWFTFSY+P+AHMVW Sbjct: 162 AFQSTFAAITCALIVGAFAERMKFAAVIAFSVLWFTFSYIPIAHMVW------------- 208 Query: 241 AEKATAISGWLFQKGALDFAGGTVVHINAAIAGLVGSYVIGKRIGFGKEAFKPHSLTLTM 300 A G LF +GALDFAGGTVVHINA +AGLVG+Y++GKR+GFGKEA PHSLTLTM Sbjct: 209 -----ATGGLLFVEGALDFAGGTVVHINAGVAGLVGAYMVGKRVGFGKEAMPPHSLTLTM 263 Query: 301 VGASLLWFGWFGFNAGSALEANGSAALAFVNTILATAAAVLSWSFGEWIGKGKPSMLGAA 360 VGASLLW GWFGFNAGSAL ANG A LAF+NTILAT AA LSW E + KGK SMLGAA Sbjct: 264 VGASLLWVGWFGFNAGSALGANGVAGLAFINTILATGAATLSWIGAEAVLKGKASMLGAA 323 Query: 361 SGAVAGLVAITPAAGFVGVIGAVVMGLIAGLLCLWGVSGLKKILGSDDALDVFGVHGVGG 420 SGAVAGLVA+TPAAGFVG +G++V+GL+AG++CLWGVSGLK++LG DDA DVFGVHGVGG Sbjct: 324 SGAVAGLVAVTPAAGFVGPMGSIVLGLLAGMICLWGVSGLKRMLGVDDAFDVFGVHGVGG 383 Query: 421 ILGALLTGVFAAPSLGGTGIYDYVANAVAPDYSIGGQVWIQFQGVLTTVILSGVVSFIAY 480 I GA++TGV AAPSLGGTG A DY++ Q+ +Q +GVL T++ SG+V+F+AY Sbjct: 384 IFGAIMTGVLAAPSLGGTG---------AADYAMAHQLMVQVKGVLITIVWSGIVAFVAY 434 Query: 481 KIVDVVIGLRVTEEEEREGLDISSHGESAYH 511 K+VD+VIGLRV +E EREGLDISSHGESAYH Sbjct: 435 KLVDMVIGLRVADEAEREGLDISSHGESAYH 465 >gi|134095617|ref|YP_001100692.1| putative ammonium transporter [Herminiimonas arsenicoxydans] Length = 400 Score = 104 bits (259), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 120/439 (27%), Positives = 185/439 (42%), Gaps = 59/439 (13%) Query: 79 NKGDTAWMLISTAFVILMTLPGLGLFYGGLVRSKNMLSVLMQCFVIFSLIYILWFVYGYS 138 G A ++ A ++L G G VR KN ++ L++ V F++ I +F GYS Sbjct: 5 KHGTDALFIMLGAIMVLAMHAGFAFLELGTVRKKNQVNALVKILVDFAVSTIAYFFVGYS 64 Query: 139 IAFTEGNAFFGGFDRLFLHGLTGDSNTGTFSKGVVIPELSFVAFQGAFAAITVALIIGSF 198 +A+ G +FFG + L T G + + F+ FAA A+I G Sbjct: 65 VAY--GVSFFGSAEVL------------TQRNGFELVKFFFLL---TFAAAIPAIISGGI 107 Query: 199 AERVKFSAVILFSILWFTFSYLPMAHMVWFWPGPDAFTDAAAAEKATAISGWL---FQKG 255 AER +F +L + L Y + W + + WL F Sbjct: 108 AERARFHPQLLATALIVGLVYPLFEGIAW--------------NQHFGVQAWLHATFGAN 153 Query: 256 ALDFAGGTVVHINAAIAGLVGSYVIGKRIG-FGKE----AFKPHSLTLTMVGASLLWFGW 310 DFAG VVH L ++G R G + KE A P S+ +GA +L GW Sbjct: 154 FHDFAGSIVVHAVGGWIALPAVLLLGARRGRYTKEGGIAAHPPSSIPFLALGAWILTIGW 213 Query: 311 FGFNAGSALEANGSAALAFVNTILATAAAVLSWSFGEWIGKGKPSMLGAASGAVAGLVAI 370 FGFN SA L VN+++A L+ GK P + +G +AGLVAI Sbjct: 214 FGFNVMSAQTMEQMNGLVAVNSLMAMVGGTLAAFLA---GKNDPGYV--HNGPLAGLVAI 268 Query: 371 TPAAGFVGVIGAVVMGLIAGLLCLWGVSGLKKILGSDDALDVFGVHGVGGILGALLTGVF 430 + + +GA+V G +AG + + S + DD L V+ +HG+ G G L G+F Sbjct: 269 CAGSNIMHPLGALVTGAVAGFVFVGMFSLTQNKWKIDDVLGVWPLHGLCGAWGGLAAGIF 328 Query: 431 AAPSLGGTGIYDYVANAVAPDYSIGGQVWIQFQGVLTTVILSGVVSFIAYKIVDVVIGLR 490 + GG G +++ Q G + ++ + + Y + + +GL Sbjct: 329 GLKAFGGLGGVSFMS---------------QLFGTALGIAIALIGGTLIYGGLKLTMGLW 373 Query: 491 VTEEEEREGLDISSHGESA 509 + E+E G D+S H SA Sbjct: 374 LDAEQEFNGADLSIHNVSA 392 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.323 0.138 0.420 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 840,550 Number of extensions: 34970 Number of successful extensions: 154 Number of sequences better than 1.0e-08: 2 Number of HSP's gapped: 145 Number of HSP's successfully gapped: 2 Length of query: 511 Length of database: 1,000,347 Length adjustment: 86 Effective length of query: 425 Effective length of database: 716,977 Effective search space: 304715225 Effective search space used: 304715225 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 131 (55.1 bits)