BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0097.p
         (112 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093432|ref|YP_001098507.1| nitrogen regulatory protein P-I...   206   3e-55
gi|134094249|ref|YP_001099324.1| regulatory protein (P-II) for n...   156   3e-40
gi|134093786|ref|YP_001098861.1| putative regulatory protein (P-...    66   5e-13
gi|134094812|ref|YP_001099887.1| regulatory protein PII [Hermini...    65   6e-13

>gi|134093432|ref|YP_001098507.1| nitrogen regulatory protein P-II 2
           [Herminiimonas arsenicoxydans]
          Length = 112

 Score =  206 bits (523), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 105/112 (93%), Positives = 109/112 (97%)

Query: 1   MKLITAIIKPFKLDEVREALSAIGVQGITVTEVKGFGRQKGHTELYRGAEYVVDFLPKTK 60
           MKLITAIIKPFKLDEVREALSAIGVQGITVTEVKGFGRQKGHTELYRGAEYVVDFLPKTK
Sbjct: 1   MKLITAIIKPFKLDEVREALSAIGVQGITVTEVKGFGRQKGHTELYRGAEYVVDFLPKTK 60

Query: 61  IEAAVDDAIVERALEAIETAARTGKIGDGKIFVQDLLDVIRIRTGETGKDAL 112
           IEAAVDDAIV+RA+EAIETAARTGKIGDGKIFV DL  V+RIRTGETGK+AL
Sbjct: 61  IEAAVDDAIVDRAIEAIETAARTGKIGDGKIFVYDLQQVVRIRTGETGKEAL 112


>gi|134094249|ref|YP_001099324.1| regulatory protein (P-II) for
           nitrogen assimilation by glutamine synthetase (ATase)
           [Herminiimonas arsenicoxydans]
          Length = 112

 Score =  156 bits (394), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 89/112 (79%), Positives = 100/112 (89%)

Query: 1   MKLITAIIKPFKLDEVREALSAIGVQGITVTEVKGFGRQKGHTELYRGAEYVVDFLPKTK 60
           MK ITAIIKPFKLDEVRE L+ +GV G+TVTEVKGFGRQKGHTELYRGAEYVVDFLPK K
Sbjct: 1   MKQITAIIKPFKLDEVREGLADVGVTGLTVTEVKGFGRQKGHTELYRGAEYVVDFLPKVK 60

Query: 61  IEAAVDDAIVERALEAIETAARTGKIGDGKIFVQDLLDVIRIRTGETGKDAL 112
           +EA VDDA+VE+A++AI  AARTGKIGDGKIFVQ +  V+RIRTGETG DA+
Sbjct: 61  VEAVVDDAVVEQAVDAIIKAARTGKIGDGKIFVQAVEQVVRIRTGETGIDAV 112


>gi|134093786|ref|YP_001098861.1| putative regulatory protein (P-II)
           for nitrogen assimilation by glutamine synthetase
           (ATase) [Herminiimonas arsenicoxydans]
          Length = 113

 Score = 65.9 bits (159), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 40/113 (35%), Positives = 58/113 (51%), Gaps = 1/113 (0%)

Query: 1   MKLITAIIKPFKLDEVREALSAIG-VQGITVTEVKGFGRQKGHTELYRGAEYVVDFLPKT 59
           MK I AII+P +L+ V  AL  +  + G T+   +G  R  G   ++   E+  D     
Sbjct: 1   MKQIIAIIQPHRLEIVERALQGMSHLPGFTLFPARGHARGHGAQHIFTADEWNPDMHEHI 60

Query: 60  KIEAAVDDAIVERALEAIETAARTGKIGDGKIFVQDLLDVIRIRTGETGKDAL 112
            +     D I + A+EAI  A+ TG  GDG I V  + D++RI +GE G  AL
Sbjct: 61  VLLMFCPDDIADEAVEAIRAASHTGNSGDGLIAVTAVEDMVRIHSGERGDAAL 113


>gi|134094812|ref|YP_001099887.1| regulatory protein PII
           [Herminiimonas arsenicoxydans]
          Length = 113

 Score = 65.5 bits (158), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 39/113 (34%), Positives = 59/113 (52%), Gaps = 1/113 (0%)

Query: 1   MKLITAIIKPFKLDEVREALSAIG-VQGITVTEVKGFGRQKGHTELYRGAEYVVDFLPKT 59
           MK I AII+P +L+ V +AL  +  + G T+   +G  R  G   ++   E+  D     
Sbjct: 1   MKQIIAIIQPHRLEMVEKALHGMNHLPGFTLFPARGHARGHGAHHIFTADEWSPDTHEHI 60

Query: 60  KIEAAVDDAIVERALEAIETAARTGKIGDGKIFVQDLLDVIRIRTGETGKDAL 112
            +     D I + A+EAI  A+ TG  GDG I V  + D++RI +GE G  A+
Sbjct: 61  VLLMFCPDDIAQDAVEAIRAASHTGNRGDGMIAVTAVEDIVRIHSGERGDAAI 113


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.319    0.139    0.375 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 205,800
Number of extensions: 7758
Number of successful extensions: 33
Number of sequences better than 1.0e-08: 4
Number of HSP's gapped: 33
Number of HSP's successfully gapped: 4
Length of query: 112
Length of database: 1,000,347
Length adjustment: 70
Effective length of query: 42
Effective length of database: 769,697
Effective search space: 32327274
Effective search space used: 32327274
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 122 (51.6 bits)