BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0096.p
         (259 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094829|ref|YP_001099904.1| signal peptide [Herminiimonas a...   259   6e-71
gi|134093431|ref|YP_001098506.1| hypothetical protein HEAR0142 [...   154   3e-39

>gi|134094829|ref|YP_001099904.1| signal peptide [Herminiimonas
           arsenicoxydans]
          Length = 250

 Score =  259 bits (663), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 141/265 (53%), Positives = 178/265 (67%), Gaps = 21/265 (7%)

Query: 1   MKKLILATAIAASFVSTVARAEDAKPDNELTFNAAVVNDYRYRGLTQTRFDPALQVGADY 60
           MKKLILA AI   F   +A AE+ KP+ E++FNAAV +DYRYRG++QTR   ALQ GADY
Sbjct: 1   MKKLILAAAITTVFAGNLAHAEEQKPEQEVSFNAAVTSDYRYRGISQTRLQAALQGGADY 60

Query: 61  THNPTGLYAGTWLTNIKWIKDAGTLAGTDTKGDVEWDIYGGKRGDIGGGFTYDVGGLAYY 120
            HNP+G YAGTWL+ +K++KDAG        GDVE DIYGGKRG I    +YDVG L+Y 
Sbjct: 61  VHNPSGFYAGTWLSTLKFVKDAG------GNGDVEVDIYGGKRGAITSDVSYDVGALSYV 114

Query: 121 YPGNTLDKVAKNANTFELYGQVGYGPGYFKYSQSLTNLFGAANSKYSQYFDLGANIETYY 180
           YP N L+    + NT E+YGQ+GYGP Y KYS S+TNLFG  +SK S Y D+GAN++   
Sbjct: 115 YPSNGLN---PSTNTTEIYGQLGYGPAYIKYSHSVTNLFGYLDSKNSAYLDIGANLDLVD 171

Query: 181 GVILGLHVGHQNVRG-----NPNQLSYTDWKIGLSKTFDQAAGITLG-LAYVGTDLKDGV 234
           G IL LH GHQ V G     + ++ +YTDWK+G++K F    GI  G LA VGTD     
Sbjct: 172 GYILNLHAGHQKVSGTNGGVSNSRFNYTDWKVGVTKDF----GIVTGALAVVGTDADKSA 227

Query: 235 STTPASDGFKNVGKNGFVVSLSKTF 259
             +PA+  F  +GK G V+++SKTF
Sbjct: 228 YASPANAKF--MGKTGLVLTVSKTF 250


>gi|134093431|ref|YP_001098506.1| hypothetical protein HEAR0142
           [Herminiimonas arsenicoxydans]
          Length = 244

 Score =  154 bits (390), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 96/232 (41%), Positives = 130/232 (56%), Gaps = 14/232 (6%)

Query: 1   MKKLILATAIAASFVSTVARAEDAKPDNELTFNAAVVNDYRYRGLTQTRFDPALQVGADY 60
           MKKLILA A+ + F  ++A AED  P++  T N  +  DYR+RGL+QT  +P +Q G DY
Sbjct: 1   MKKLILAAAVMSVFAGSLAHAEDVIPEHTFTGNVTLATDYRFRGLSQTFKEPTIQGGFDY 60

Query: 61  THNPTGLYAGTWLTNIKWIKDAGTLAGTDTKGDVEWDIYGGKRGDIGGGFTYDVGGLAYY 120
            H+ +G Y G W +N+    D   +      G++E D+YGG +  I    T DVG L YY
Sbjct: 61  AHS-SGFYVGNWNSNV----DTSAI----NNGNIEMDLYGGYKFAIAPDLTGDVGVLHYY 111

Query: 121 YPGNTLDKVAKNANTFELYGQVGYGPGYFKYSQSLTNLFGAANSKYSQYFDLGANIETYY 180
           YPG       K+ NT E+Y    Y     KYS ++++ FG  NSK S Y DLGA  E   
Sbjct: 112 YPGAET-AAGKSINTTEVYVGATYKWFSAKYSHAVSDFFGVDNSKGSGYLDLGAAFEVAE 170

Query: 181 GVILGLHVGHQNVRGNPNQLSYTDWKIGLSKTFDQAAGITLGLAYVGTDLKD 232
              L  HVG Q VR N     YTD+K+G+++ F  A   T+ LA +GT+ KD
Sbjct: 171 KTTLSFHVGRQKVRHNSAS-DYTDYKVGIARDFGFA---TISLAAIGTNAKD 218


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.316    0.136    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 524,472
Number of extensions: 21756
Number of successful extensions: 66
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 58
Number of HSP's successfully gapped: 2
Length of query: 259
Length of database: 1,000,347
Length adjustment: 80
Effective length of query: 179
Effective length of database: 736,747
Effective search space: 131877713
Effective search space used: 131877713
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 128 (53.9 bits)