BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0094.p
         (511 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093428|ref|YP_001098503.1| competence protein comM [Hermin...   714   0.0  

>gi|134093428|ref|YP_001098503.1| competence protein comM
           [Herminiimonas arsenicoxydans]
          Length = 507

 Score =  714 bits (1842), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 360/511 (70%), Positives = 413/511 (80%), Gaps = 4/511 (0%)

Query: 1   MSLAVLRSRALAGMSALPVTVEVHLANGLPAFTIVGLPDTEVKEARDRVRAALQNARFEF 60
           MSLAVL+SRALAGM A  VTVEVHLANGLP FTIVGLP+TEVKE++DRVRAALQNA FEF
Sbjct: 1   MSLAVLKSRALAGMLAPEVTVEVHLANGLPQFTIVGLPETEVKESKDRVRAALQNAGFEF 60

Query: 61  PARRITINLAPADLPKESGRFDLAMALGILAASGQIPADRLDEHEYAGELSLSGQLLPIR 120
           PARRIT+NLAPADLPKESGRFDL +ALGILAASGQIP D L E+E+AGELSLSG+L PIR
Sbjct: 61  PARRITVNLAPADLPKESGRFDLPIALGILAASGQIPGDALTEYEFAGELSLSGELRPIR 120

Query: 121 GALAMTCAIQRDTQAHAETAGHQRSFILPAANADEAALVPQACILPATSLLDVCAHFSTR 180
           GALAMT AI R++  +A      R+FILP  NADEAALV    ILPA SLL VCAHF+  
Sbjct: 121 GALAMTFAIHRNSDKNAPP----RAFILPRMNADEAALVRDVTILPADSLLQVCAHFAAP 176

Query: 181 DQRERLQPHQARAISPRPAYPDFSDIKGQLQARRAMEVAAAGQHSMLLVGPPGAGKSMLA 240
           D   RL  H A  IS RP+YPD +D+KGQ QA+RA+EVAAAG HSML+VGPPG GKSMLA
Sbjct: 177 DSDARLTRHIATLISTRPSYPDLADVKGQAQAKRALEVAAAGGHSMLMVGPPGTGKSMLA 236

Query: 241 TRFPGILPPMTQEQALESAAVQSLSGSFDISRWQQRPFRAPHHTASAVALVGGGSTPRPG 300
            RF GILPPMT E+ALESAAV SL+  F  +RW+ RP+R+PHHTAS VALVGGG TPRPG
Sbjct: 237 ARFAGILPPMTDEEALESAAVLSLTSGFTTARWKVRPYRSPHHTASGVALVGGGGTPRPG 296

Query: 301 EISLAHHGVLFLDEIAEYPRSVLDVLRQPMESGRITISRAARQAEFPARFQLVAAMNPCP 360
           EISLAH GVLFLDE+ E+ R+VL+VLR+P+ESG+ITISRAARQA+FPARFQL+AAMNPCP
Sbjct: 297 EISLAHRGVLFLDELPEFSRAVLEVLREPLESGQITISRAARQADFPARFQLLAAMNPCP 356

Query: 361 CGLHGEASGRCRCTPELVKRYQARLSGPLLDRIDMQLQVGALSPAELAAHQPGEPSAAIA 420
           CG  G  S +CRCTP+++ RYQ ++SGPLLDRIDMQ+QVGAL+  +L     GE S  +A
Sbjct: 357 CGYLGHPSNKCRCTPDVITRYQGKISGPLLDRIDMQIQVGALAHEDLLKQSTGESSEHVA 416

Query: 421 QRVALAFDLQLQRQGKPNSQLSGSEIDRYCQPDQAASQLLQAAMVRLEWSARAYHRVLKL 480
            RVA A   QL RQGK N  LS SE+D +C+PD+A  QLL+ AM RL WSARAYHRVLK+
Sbjct: 417 ARVAHASTRQLSRQGKHNHLLSSSEMDSHCKPDEAGEQLLRTAMTRLNWSARAYHRVLKV 476

Query: 481 ARTIADLATSDALGQAHVAEAIQYRRGLAGQ 511
           ARTIADL  +  + QAHVAEAIQYRR L  Q
Sbjct: 477 ARTIADLDGASIIRQAHVAEAIQYRRALREQ 507


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.320    0.132    0.385 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 970,436
Number of extensions: 40267
Number of successful extensions: 193
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 192
Number of HSP's successfully gapped: 1
Length of query: 511
Length of database: 1,000,347
Length adjustment: 86
Effective length of query: 425
Effective length of database: 716,977
Effective search space: 304715225
Effective search space used: 304715225
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 131 (55.1 bits)