BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0087.p
         (175 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093424|ref|YP_001098499.1| hypothetical protein HEAR0135 [...   136   7e-34

>gi|134093424|ref|YP_001098499.1| hypothetical protein HEAR0135
           [Herminiimonas arsenicoxydans]
          Length = 192

 Score =  136 bits (342), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 72/174 (41%), Positives = 105/174 (60%), Gaps = 15/174 (8%)

Query: 10  CLSLACLCLAACSPRYNWRQASDNGAHFMVLLPAKPASVTRPIDLDGPRVDMSMTAAEVD 69
            L    L L+ACSP+Y+WR+   + A +++ LP KP + +R IDL+G    M+M A+EVD
Sbjct: 22  TLVATVLFLSACSPKYDWREVHSDNASYVIALPTKPTTFSRKIDLNGIPASMTMVASEVD 81

Query: 70  GLTFAVGSAELPDAAAAMRALETMRTALLNNIAGQ---------PQGTPTWPGQTTVFAR 120
           G+TFAVG+AEL DA  A  +   M+TAL+NNI+G+         PQ     PG   V   
Sbjct: 82  GVTFAVGTAELSDATQAQVSAAAMKTALVNNISGKISQEKVLTMPQSMQA-PGTVAV--- 137

Query: 121 TIDLDARG-LSRGRPLRLVARLAVRERRVYQILIVGDEKAFKEENIETFFSSFK 173
             +++A G  + G+   L AR   +E+RVYQ+++ G EKA   + ++TFF SFK
Sbjct: 138 -TEIEATGPAANGQTRILFARFIAKEKRVYQLVVTGPEKAVGRDIVDTFFQSFK 190


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.324    0.135    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 217,304
Number of extensions: 6178
Number of successful extensions: 38
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 37
Number of HSP's successfully gapped: 1
Length of query: 175
Length of database: 1,000,347
Length adjustment: 76
Effective length of query: 99
Effective length of database: 749,927
Effective search space: 74242773
Effective search space used: 74242773
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 125 (52.8 bits)