BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0084.p
         (210 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093421|ref|YP_001098496.1| hypothetical protein HEAR0132 [...   233   6e-63

>gi|134093421|ref|YP_001098496.1| hypothetical protein HEAR0132
           [Herminiimonas arsenicoxydans]
          Length = 212

 Score =  233 bits (594), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 112/183 (61%), Positives = 143/183 (78%), Gaps = 3/183 (1%)

Query: 30  WLL--VLLAFSTLLTGSAAQAAEITVNQASIEASDEGYRLSVSYDFDLNRGLEDALSRGV 87
           WL   +LLAFS  L  + A A  I + QA +E S +GYRLS ++ F+LNRGLEDAL+RG+
Sbjct: 29  WLCTTLLLAFSLQLDYARA-ADGIEIEQAHLEDSAQGYRLSATFVFNLNRGLEDALTRGI 87

Query: 88  PLYFTTEVQLTRRRWYWFDETSVSSTRTLRLSYNVLTRQYHTAISGQLQQSFTNLDDALT 147
           PLYFTTE+++T+ RWYWFD   +  ++T+R+SYNVLTRQYH AI+G+LQQSF  LDDAL+
Sbjct: 88  PLYFTTEIEITKPRWYWFDSKEIVDSQTIRISYNVLTRQYHAAITGRLQQSFQTLDDALS 147

Query: 148 LIRRPPRWIIADNNTLKAGEIYHVGLRMRLDVALLPKPFQVNALNNSDWRLSSDWIEFNY 207
           L+RRP RW++AD N LK G+ Y V +RM+LDVA LPKPFQV+ALN+SDWRLSS+W  F Y
Sbjct: 148 LVRRPNRWVVADKNALKPGQSYAVAVRMQLDVAQLPKPFQVHALNSSDWRLSSNWKHFIY 207

Query: 208 KPE 210
             E
Sbjct: 208 TVE 210


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.321    0.134    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 327,125
Number of extensions: 10407
Number of successful extensions: 35
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 35
Number of HSP's successfully gapped: 1
Length of query: 210
Length of database: 1,000,347
Length adjustment: 78
Effective length of query: 132
Effective length of database: 743,337
Effective search space: 98120484
Effective search space used: 98120484
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 126 (53.1 bits)