BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0083.p (759 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134093420|ref|YP_001098495.1| putative two-component sensor k... 978 0.0 gi|134095936|ref|YP_001101011.1| sensor kinase PilS [Herminiimon... 74 2e-14 gi|134096599|ref|YP_001101674.1| putative sensor histidine kinas... 73 5e-14 gi|134095107|ref|YP_001100182.1| putative oxidative stress resis... 72 7e-14 gi|134094185|ref|YP_001099260.1| two-component system sensory hi... 72 1e-13 >gi|134093420|ref|YP_001098495.1| putative two-component sensor kinase [Herminiimonas arsenicoxydans] Length = 767 Score = 978 bits (2527), Expect = 0.0, Method: Compositional matrix adjust. Identities = 521/776 (67%), Positives = 614/776 (79%), Gaps = 30/776 (3%) Query: 1 MSRTLRYLLVVGGGVISILLFLLASASENSALFEQHYPWLLFLNGLAAISLLGLVLLLLG 60 M+R LRYLLVVGG VISILLFLLASASENS LFE++YPWLL LN + A +LLGLV LLL Sbjct: 1 MTRLLRYLLVVGGAVISILLFLLASASENSNLFERNYPWLLILNAVVAAALLGLVTLLLI 60 Query: 61 RLYKRYRRGKFGSKLLARLVLMFALVGIVPGAVIYLMSVQFVSRSIESWFDVRMEAALES 120 RLYKRY+RGKFGSKL+ARLVL+FA++GI+PGAVIY +SVQFVSRSIESWFDVR+E+ALES Sbjct: 61 RLYKRYKRGKFGSKLMARLVLLFAMIGILPGAVIYTVSVQFVSRSIESWFDVRVESALES 120 Query: 121 GLNLGRNALDSSLSDLVSRARGMAQELSDMSDSEQVTYLSRQRDQN--MEITIVNANGQV 178 GLNLGR+ALDSSL +L +AR MA ELSD S++ Q+T LSR RDQN +E IV++NGQ+ Sbjct: 121 GLNLGRSALDSSLDELRIKARSMALELSDASEATQITQLSRLRDQNSMLEAVIVSSNGQM 180 Query: 179 MGTVGGSIGSLTPTLPSPQATRQARVSRAFSAVESDDTRPPNGESDSDG----------- 227 + + G + +L P LP+ RQAR++RA++ +E + N S S+ Sbjct: 181 IASSGSQLSALLPDLPTAAMLRQARLTRAYAVIEGNTDFQDNSPSASNAKTNTITASAAN 240 Query: 228 ---NLRLHVVVLIPAPSRGMSLQNETRYLQILQPVPDYLASNAETLRLAYNEYQQRSVSR 284 +LRL VV+ IP S+ +SLQ+E+RYLQ+LQPVP+ LA+NAE LR+AY+EYQ+R ++R Sbjct: 241 PANSLRLRVVIAIPNSSKELSLQSESRYLQLLQPVPEQLAANAEALRVAYSEYQERYLAR 300 Query: 285 SGLRKIYLVTLTLTLLLAIFAAIASAFLIASDLAKPLLLLAEGTKAVAEGNLSPRPIVST 344 +GLRKIY+VTLTLTLLLAIF AIA AFLIASDLAKPLLLLAEGTKAVAEGNLSPRPIV+T Sbjct: 301 TGLRKIYIVTLTLTLLLAIFGAIAGAFLIASDLAKPLLLLAEGTKAVAEGNLSPRPIVTT 360 Query: 345 SDELGTLTQSFNTMTRQLLEARTSVEKNRAELENAKAYLESVLANMSAGVMVLDGHFNIV 404 SDELGTLTQSFN MTRQL +AR SVEKNRAELENAK YLESVLANMSAGVMVLD +F +V Sbjct: 361 SDELGTLTQSFNMMTRQLSDARASVEKNRAELENAKGYLESVLANMSAGVMVLDRNFKLV 420 Query: 405 SANDSVRRILGYDFSANIGTPLQTIDSQAPFAQAIIRAFSEQLAQHSSDGAD--GLHWQR 462 + N+SV RIL +DF+ +IG PLQ ID + FAQ I ++FSEQ AQ ++ GAD LHWQ Sbjct: 421 TCNESVERILQHDFAQHIGKPLQEIDGLSAFAQVITQSFSEQSAQSAAGGADTGNLHWQH 480 Query: 463 QFELSRQPGAVLEANDEQGGKPDHDKLTLLARGSHLPVENGVGYVVVFDDISNVISAQRS 522 Q ++ R+ G ND ++LLARGS LP GYVVVFDDIS+VISAQRS Sbjct: 481 QIDVPRRMGGAEAEND----------ISLLARGSRLPAARDSGYVVVFDDISDVISAQRS 530 Query: 523 IAWGEVARRLAHEIKNPLTPIQLSAERLQHRLADKLMPADAAILDKGTTTIVNQVTAMKR 582 IAWGEVARRLAHEIKNPLTPIQLSAERLQ +L KL DA IL++ T TIVNQV+AM+R Sbjct: 531 IAWGEVARRLAHEIKNPLTPIQLSAERLQMKLEGKLNEQDARILERSTATIVNQVSAMQR 590 Query: 583 MVDDFRDYAKTPPAKPVALDLNALIEEILNLYLAGDGRDVIHARLAPEMSKVMGDATQMR 642 MVDDFRDYAKTPPA LDLNALIEEIL+LY GD RD+IHARLA + VMGDATQ+R Sbjct: 591 MVDDFRDYAKTPPAVLSPLDLNALIEEILHLYQTGDERDIIHARLAEGLPLVMGDATQLR 650 Query: 643 QVIHNLLQNAQDAVTDDGHQ--APRIDVLTEQIDIAGTNGQRQPAVRLSIMDNGPGFSPT 700 QVIHNLLQNAQDAV D Q RID++TE+I ++G AV+LSI D GPGFSP Sbjct: 651 QVIHNLLQNAQDAVADQIRQESTARIDIITEEIHYRSSDGTVSNAVQLSITDTGPGFSPK 710 Query: 701 ILARAFEPYVTSKARGTGLGLAMVKKIVEEHGGRIDIQNRTDGRGAKIVILLVKLA 756 ILA AFEPY+TSK RGTGLGLAMVKKI+EEHGGRIDI+NRT GAK+ ILL+KL+ Sbjct: 711 ILAHAFEPYITSKPRGTGLGLAMVKKIIEEHGGRIDIKNRTSTNGAKVAILLLKLS 766 >gi|134095936|ref|YP_001101011.1| sensor kinase PilS [Herminiimonas arsenicoxydans] Length = 533 Score = 74.3 bits (181), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 115/488 (23%), Positives = 208/488 (42%), Gaps = 76/488 (15%) Query: 284 RSGLRKIYLVTLTLTLLLAIFAAIASAFLIASDLAKPLLLLAE-GTKAVAE-GNLSPRPI 341 +SGL +YL L AI A + A S A L+LLAE G + + E ++S + Sbjct: 73 KSGLAILYLFPLAGG---AILAPLVLALFFVS--AVTLILLAENGYQLLNESADISSSQV 127 Query: 342 VSTSDELGTLTQSFNTMTRQLLEARTSVEKNRAELENAKAYLESVLANMSAGVMVLDGHF 401 + + N + +L++ + L +A V+A+M G++V+D Sbjct: 128 GLYGAAFFFIIFAINRLAARLIKQESLALGRGKALHVQQAINRLVIADMEDGILVVDRKG 187 Query: 402 NIVSANDSVRRILGYDFSAN--------------IGTPLQTIDSQAPF---AQAIIRAFS 444 ++++N + R+LG F I Q D++ QA + F Sbjct: 188 RVLTSNPAAARMLGLVFPHEKAYGKLSDMAWLRPIADAYQAWDAKVDLRATTQANVPTFV 247 Query: 445 EQLAQHSSDGADGLHWQRQFELSRQPGAVLEANDEQGGKPD---HDKLTLLARGSHLPVE 501 L +H D + Q G + GG+ + H KL + +E Sbjct: 248 --LIKHIDDT------------TLQGGTTV-----MGGRRELITHLKLRFAKVDADGVLE 288 Query: 502 NGVGYVVVFDDISNVISAQRSI---AWGEVARRLAHEIKNPLTPIQLSAERLQHRLADKL 558 + V V+ D++ + + + + + G + +AHE++NPL+ I +A L ++L Sbjct: 289 DRV--VIFLQDVTEIENRAQQLKLASMGRLTASIAHEVRNPLSAIGHAASLLSE---EEL 343 Query: 559 MPADAAILDKGTTTIVNQVTAMKRMVDDFRDYAKTPPAKPVALDLNALIEEIL----NLY 614 + +L T I V + RM++D ++ L L L +++L ++ Sbjct: 344 NASRQRLL----TIISENVARLNRMIEDILKLSRKAHQYHEPLCLGLLFDDVLAELHEMH 399 Query: 615 LAGDGRDVIHARLAPEMSKVMGDATQMRQVIHNLLQNAQDAVTDDGHQAPRIDVLTEQID 674 +G I +AP KV D +R+++ NLL NA + AP + + Sbjct: 400 AVQEGMIAI-GDMAPH--KVRFDPLHLREIVLNLLTNALRYASG----APG----SIRAY 448 Query: 675 IAGTNGQRQPAVRLSIMDNGPGFSPTILARAFEPYVTSKARGTGLGLAMVKKIVEEHGGR 734 IA G R + L + D+GP + + A FEP+ T+ ++GTGLGL + +++ +G Sbjct: 449 IAPGVGHR---LELHVQDDGPQITSAVRAHLFEPFYTTSSKGTGLGLYLARELCLNNGAM 505 Query: 735 IDIQNRTD 742 ++ + RTD Sbjct: 506 LNYEYRTD 513 >gi|134096599|ref|YP_001101674.1| putative sensor histidine kinase [Herminiimonas arsenicoxydans] Length = 678 Score = 73.2 bits (178), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 65/244 (26%), Positives = 119/244 (48%), Gaps = 22/244 (9%) Query: 516 VISAQRSIAWGEVARRLAHEIKNPLTPIQLSAERLQHRLADKLMPADAA--ILDKGTTTI 573 ++ A++ A GE+ +AHEI NP+ +Q + + L+ L P ++D+ I Sbjct: 450 LVLAEKLAAIGEITAGVAHEINNPVAVLQGNLDVLRDTLGAAATPVQGELRLMDQQIHRI 509 Query: 574 VNQVTAMKRMVD--DFRDYAKTPPAKPVALDLNALIEEILNLYLAGDGRDVIHARLAPEM 631 VT + + +F Y + V +D L+ +LN +V+H R A Sbjct: 510 NTIVTKLLQFASPGEFAGYVEAIAVDEVVVDTLVLVRHLLN----QSNIEVVHNRHATLA 565 Query: 632 SKVMGDATQMRQVIHNLLQNAQDAVTDDGHQAPRIDVLT-EQIDIAGTNGQRQPAVRLSI 690 + + +++QV+ NL NA A+ + G R+ + + + ID AG G V +++ Sbjct: 566 VHI--NRGELQQVLINLFTNAVHAMKNGG----RLTIESRDWIDDAGARG-----VTINV 614 Query: 691 MDNGPGFSPTILARAFEPYVTSKAR-GTGLGLAMVKKIVEEHGGRIDIQNRTDGRGAKIV 749 +D G G AR F+ + T+K + GTGLGL++ +V +GG I +++ +G G + Sbjct: 615 IDTGAGIKKEDQARIFDAFFTTKRQGGTGLGLSISYTLVARYGGTITVKSE-EGVGTEFT 673 Query: 750 ILLV 753 + L+ Sbjct: 674 VRLL 677 >gi|134095107|ref|YP_001100182.1| putative oxidative stress resistance two-coponent transmembrane sensor histidine kinase transcription regulator [Herminiimonas arsenicoxydans] Length = 455 Score = 72.4 bits (176), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 70/229 (30%), Positives = 115/229 (50%), Gaps = 35/229 (15%) Query: 532 LAHEIKNPLTPIQLSAERLQHRLADKLMPADAAILDKGTTTIVNQVTAMKRMVDDFRDYA 591 ++H+++ PL +QL E +P DA KG + + Q+ A+ + F DYA Sbjct: 242 ISHDLRTPLARMQLEVEMAG-------LPDDAR---KGMQSDLEQMDAI---IGQFLDYA 288 Query: 592 KTPPAKPV-ALDLNALIEEILNLYLAGDGRDV-IHARLAPEMSKVMGDATQMRQVIHNLL 649 K + ++DL AL+ E + A DV +H + +++ V+G+A +++V++NL+ Sbjct: 289 KPVDSSHFKSVDLTALLSEAA--HEAARLPDVQVHPFMEDKVT-VLGNAIDIKRVVNNLV 345 Query: 650 QNAQD-AVTDDGHQAPRIDVLTEQIDIAGTNGQRQPAVRLSIMDNGPGFSPTILARAFEP 708 +NA+ D H ID+ I G V L I D+G G +AR P Sbjct: 346 ENARRYGKATDAHHVD-IDICCR---IEGDK------VMLEIADHGAGVPAEEIARLLRP 395 Query: 709 YVT-----SKARGTGLGLAMVKKIVEEHGGRIDIQNRTDGRGAKIVILL 752 + +A G GLGLA+V +IV+ HGG++ + NR DG G + I+L Sbjct: 396 FTRMDSARGQANGAGLGLAIVDRIVKRHGGKLHLFNR-DGGGLTVQIVL 443 >gi|134094185|ref|YP_001099260.1| two-component system sensory histidine kinase [Herminiimonas arsenicoxydans] Length = 357 Score = 71.6 bits (174), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 65/240 (27%), Positives = 119/240 (49%), Gaps = 18/240 (7%) Query: 521 RSIAWGEVARRLAHEIKNPLTPIQLSAERLQHRLADKLMPADAAILDKGTTTIVNQVTAM 580 +S A E+ R LAHEIKNPL I+ +A+ L+ L ++ + L + T I+ + + Sbjct: 127 QSQANKELIRNLAHEIKNPLGGIRGAAQLLELELPERHVKE----LREYTQVIIKEADRL 182 Query: 581 KRMVDDFRDYAKTPPAKPVAL----DLNALIEEILNLYLAGDGRDVIHARLAPEMS--KV 634 + +VD P + + + +++ + E + +L +A + + R ++S + Sbjct: 183 QTLVDRL-----LAPHRSLHIVGDVNIHEVCERVRSLIVA-EFPSGLKIRRDYDLSIPEF 236 Query: 635 MGDATQMRQVIHNLLQNAQDAVTDDGHQAPRIDVLTEQI--DIAGTNGQRQPAVRLSIMD 692 GD Q+ Q + N+ NA ++ VL +I ++ + + A+ L I+D Sbjct: 237 RGDKEQLIQAVLNIAHNAAQVLSSHIKSGDAEIVLRTRIARNVTLAKVRYRLALDLHIID 296 Query: 693 NGPGFSPTILARAFEPYVTSKARGTGLGLAMVKKIVEEHGGRIDIQNRTDGRGAKIVILL 752 NGPG P I R F P V+ + G+GLGL + + V++H G I+ ++R +I+I L Sbjct: 297 NGPGIPPDIQDRIFYPLVSGRDGGSGLGLTLAQTFVQQHMGLIECESRPGCTDFRILIPL 356 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.318 0.134 0.372 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 1,296,618 Number of extensions: 52139 Number of successful extensions: 267 Number of sequences better than 1.0e-08: 11 Number of HSP's gapped: 256 Number of HSP's successfully gapped: 11 Length of query: 759 Length of database: 1,000,347 Length adjustment: 89 Effective length of query: 670 Effective length of database: 707,092 Effective search space: 473751640 Effective search space used: 473751640 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 132 (55.5 bits)