BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0082.p (248 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134093419|ref|YP_001098494.1| putative two-component response... 335 1e-93 gi|134093575|ref|YP_001098650.1| putative two-component hybrid s... 69 2e-13 gi|134095064|ref|YP_001100139.1| LuxR family transcriptional reg... 65 3e-12 gi|134096598|ref|YP_001101673.1| two-component regulatory system... 65 5e-12 gi|134095935|ref|YP_001101010.1| type 4 fimbriae expression regu... 62 4e-11 >gi|134093419|ref|YP_001098494.1| putative two-component response regulator containing CheY-like receiver [Herminiimonas arsenicoxydans] Length = 236 Score = 335 bits (859), Expect = 1e-93, Method: Compositional matrix adjust. Identities = 176/248 (70%), Positives = 194/248 (78%), Gaps = 15/248 (6%) Query: 1 MANILVVDDEMGIRELLSEILGDEGHVVTTAENAQQARELRQAGVPDLVLLDIWMPDTDG 60 MANILVVDDEMGIRELLSEILGDEGHVV TAENAQQARELR A PDLVLLDIWMPDTDG Sbjct: 1 MANILVVDDEMGIRELLSEILGDEGHVVATAENAQQARELRAAAKPDLVLLDIWMPDTDG 60 Query: 61 VTLLKEWQRDGLLTMPVIMMSGHATIDTAVEATRIGALNFLEKPIALQKLLKAVQQGLSH 120 VTLLKEWQRDGLLTMPVIMMSGHATIDTAVEATRIGALNFLEKPI+LQKLLKAVQQG+S Sbjct: 61 VTLLKEWQRDGLLTMPVIMMSGHATIDTAVEATRIGALNFLEKPISLQKLLKAVQQGISR 120 Query: 121 SREAVRPASYRPAPVAAVANGATDGLHVEHVTPATTYAPALGGEALHQGAPAAAPFGQVA 180 +E R AS P + N H++ ++ P G P + P ++ Sbjct: 121 GQEVSRVASI-PVRAPIIHNDT-------HLSSDRSHQPLAG-----ISYPTSTPVSLMS 167 Query: 181 DNAA--NISFDLPLREARDAFERAYFEYHLVRENGSMTRVAERTGLERTHLYRKLKQLGV 238 + SF+LPLREARDAFERAYFE+HL +E GSMTRVAE+TGLERTHLYRKLKQLGV Sbjct: 168 ADTQFFTTSFELPLREARDAFERAYFEHHLGQEGGSMTRVAEKTGLERTHLYRKLKQLGV 227 Query: 239 EPGKLARK 246 EPGK+A+K Sbjct: 228 EPGKIAKK 235 >gi|134093575|ref|YP_001098650.1| putative two-component hybrid sensor and regulator [Herminiimonas arsenicoxydans] Length = 468 Score = 69.3 bits (168), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 35/114 (30%), Positives = 67/114 (58%), Gaps = 1/114 (0%) Query: 2 ANILVVDDEMGIRELLSEILGDEGHVVTTAENAQQARELRQAGVPDLVLLDIWMPDTDGV 61 IL+++D + E+LSE+L EGH +T+A + E+ Q + D++L DI +P DG Sbjct: 349 CRILLIEDNVSANEILSELLTMEGHTITSAFDGTSGLEMAQNNIYDIILCDIGLPGIDGY 408 Query: 62 TLLKEWQRDGLLTMPV-IMMSGHATIDTAVEATRIGALNFLEKPIALQKLLKAV 114 ++K + + + +P+ I +SG++ + A R+G ++L KP+A+ L+ + Sbjct: 409 EVVKRLRLNTVKAVPLCIAISGYSQQENRSNAERVGFDHYLVKPVAITTLVNLI 462 >gi|134095064|ref|YP_001100139.1| LuxR family transcriptional regulator [Herminiimonas arsenicoxydans] Length = 215 Score = 65.1 bits (157), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 38/115 (33%), Positives = 67/115 (58%), Gaps = 3/115 (2%) Query: 4 ILVVDDEMGIRELLSEILGDEGHVVTT--AENAQQARELRQAGVPDLVLLDIWMPDTDGV 61 +L+ DD +RE L +IL D +V AEN +A L + G+ +++LLDI MPD G+ Sbjct: 9 VLIADDHAIVREGLKQILADTRDIVVAGHAENGSEAIRLSREGLCNVLLLDISMPDRSGI 68 Query: 62 TLLKEWQRDGLLTMPVIMMSGHATIDTAVEATRIGALNFLEKPIALQKLLKAVQQ 116 +LK+ +++ + ++M+S H A+ + + GA +L K A +L+ A++Q Sbjct: 69 EVLKQVRKES-PKIAILMLSMHREDQYAIRSLKAGAAGYLNKQSAPAELVTAIRQ 122 >gi|134096598|ref|YP_001101673.1| two-component regulatory system response regulator [Herminiimonas arsenicoxydans] Length = 474 Score = 64.7 bits (156), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 42/128 (32%), Positives = 68/128 (53%), Gaps = 3/128 (2%) Query: 3 NILVVDDEMGIRELLSEILGDEGHVVTTAENAQQARELRQAGVPDLVLLDIWMPDTDGVT 62 +IL+VDDE G+R L L D V ++ + A L + DL++LD +P GV Sbjct: 38 SILIVDDEPGMRSFLQRTLEDRCSRVEAVDSVEAASVLLDSRHFDLIILDNSLPGKSGVE 97 Query: 63 LLKEWQRDGLLTMPVIMMSGHATIDTAVEATRIGALNFLEKPIALQKLLKAVQQGLSHSR 122 L E + GL V++++ A ++TA+ A R GA +FL KP + ++L A+ G R Sbjct: 98 WLHEMRALGLHN-DVVLITAFADLETAIHALRAGAADFLLKPFRVNQILSAI--GRCFDR 154 Query: 123 EAVRPASY 130 +R ++ Sbjct: 155 THLRRENF 162 >gi|134095935|ref|YP_001101010.1| type 4 fimbriae expression regulatory protein [Herminiimonas arsenicoxydans] Length = 475 Score = 61.6 bits (148), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 54/168 (32%), Positives = 83/168 (49%), Gaps = 7/168 (4%) Query: 4 ILVVDDEMGIRELLSEILGDEGHVVTTAENAQQARELRQAGVPDLVLLDIWMPDTDGVTL 63 ILVVDDE +RELL L G + +A + AR+ LVL D+ +PD G+ L Sbjct: 6 ILVVDDEADLRELLEITLIKMGLDIDSAATLEAARDYLAKTEYALVLTDMRLPDGLGIEL 65 Query: 64 LKEWQRDGLLTMPVIMMSGHATIDTAVEATRIGALNFLEKPIALQKLLKAVQQGLSHSRE 123 ++E T P+ +++ + D AV A + GA ++L KP+ L++L V+ L S+ Sbjct: 66 VQEVTAQYKNT-PIAVITAFGSADNAVIALKAGAFDYLSKPVGLEQLRVMVRSALRISQG 124 Query: 124 AVRPASYRP--APVAAVANGATD---GLHVEHVTPATTYAP-ALGGEA 165 V + AP A G +D L + A + AP A+ GE+ Sbjct: 125 VVSDKVNQKAIAPTALRLMGQSDAMQALRAQIARLARSMAPVAISGES 172 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.317 0.133 0.382 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 501,407 Number of extensions: 21790 Number of successful extensions: 152 Number of sequences better than 1.0e-08: 18 Number of HSP's gapped: 148 Number of HSP's successfully gapped: 18 Length of query: 248 Length of database: 1,000,347 Length adjustment: 79 Effective length of query: 169 Effective length of database: 740,042 Effective search space: 125067098 Effective search space used: 125067098 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 127 (53.5 bits)