BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0079.p
         (243 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093416|ref|YP_001098491.1| putative S-adenosylmethionine-d...   285   1e-78
gi|134095863|ref|YP_001100938.1| tRNA (m7G46) methyltransferase,...    61   5e-11

>gi|134093416|ref|YP_001098491.1| putative
           S-adenosylmethionine-dependent methyltransferase
           [Herminiimonas arsenicoxydans]
          Length = 220

 Score =  285 bits (730), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 137/211 (64%), Positives = 163/211 (77%), Gaps = 2/211 (0%)

Query: 33  LSALVARHAHPAHPFRKPVTDYNLRAFEASMAAWGAAGEPPLILDTGCGVGLSTLHLAAQ 92
           + A +ARHA   H F+KP+TDYN  AF+ SM AW  AG  PLILD  CGVGLS+LHLA Q
Sbjct: 1   MGARLARHA--THVFQKPITDYNRAAFQHSMTAWQQAGAKPLILDAACGVGLSSLHLATQ 58

Query: 93  YPDHFVIGIDQSADRLARHTHWDGPEPDNLCFVRADLVDYWRLAQQAGLRPAQHYLLYPN 152
           +PDHFVIG+DQSADR+AR+THW  P P N+  +RADLVDYWRL  Q+G+   +HY+LYPN
Sbjct: 59  FPDHFVIGVDQSADRIARNTHWPHPMPSNVLRLRADLVDYWRLLLQSGVPLVRHYILYPN 118

Query: 153 PWPKIGHLARRWHGHAVFPFILSLGGRLECRSNWRIYVEEFTSALNQLTGRSIQAEPWLP 212
           PWPKIGHLARRW GH VFP I++LGG LECRSNWRIYVEEF +AL QLT + +  E ++P
Sbjct: 119 PWPKIGHLARRWQGHPVFPTIVALGGVLECRSNWRIYVEEFGTALQQLTQQPVACEAYVP 178

Query: 213 ATPITPFERKYLASGHALWRCVVDLDDGAAA 243
              ITPFE+KY ASGHALWRC + L  G +A
Sbjct: 179 ERAITPFEQKYQASGHALWRCRIALASGHSA 209


>gi|134095863|ref|YP_001100938.1| tRNA (m7G46) methyltransferase,
           SAM-dependent [Herminiimonas arsenicoxydans]
          Length = 239

 Score = 61.2 bits (147), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 46/175 (26%), Positives = 76/175 (43%), Gaps = 16/175 (9%)

Query: 73  PLILDTGCGVGLSTLHLAAQYPDHFVIGIDQSADRLARHTHWDGP-EPDNLCFVRAD--- 128
           P I + G G+G +T ++AA  PD   IG++     +       G  E  NL  ++ D   
Sbjct: 68  PTIFEIGFGMGETTANIAAGMPDKNFIGVEVHTPGVGSLLKQIGERELTNLRIIQHDAFE 127

Query: 129 -LVDYWRLAQQAGLRPAQHYLLYPNPWPKIGHLARRWHGHAVFPFI---LSLGGRLECRS 184
            L +    A  AG+     ++ +P+PW K  H  RR     +   +   +  GG L C +
Sbjct: 128 VLTNMIAPASLAGV-----HVFFPDPWHKARHNKRRLIQPPLVQLLSSRIKTGGYLHCAT 182

Query: 185 NWRIYVEEFTSALNQLTGRSIQAEPWLPA---TPITPFERKYLASGHALWRCVVD 236
           +W+ Y E+    L         A+ + P     P+T FE + +  GH +W  V +
Sbjct: 183 DWQEYAEQMLEVLGAEASLRNTADTYAPRPDYRPVTKFENRGIKLGHGVWDLVFE 237


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.324    0.138    0.468 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 531,238
Number of extensions: 22594
Number of successful extensions: 74
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 72
Number of HSP's successfully gapped: 2
Length of query: 243
Length of database: 1,000,347
Length adjustment: 79
Effective length of query: 164
Effective length of database: 740,042
Effective search space: 121366888
Effective search space used: 121366888
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 127 (53.5 bits)