BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0077.p (240 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134093511|ref|YP_001098586.1| glutamate/aspartate transport A... 254 2e-69 gi|134094078|ref|YP_001099153.1| sulfate permease A protein chro... 147 5e-37 gi|134096365|ref|YP_001101440.1| phosphite import ATP-binding pr... 145 1e-36 gi|134093752|ref|YP_001098827.1| phosphate import ATP-binding pr... 143 8e-36 gi|134096011|ref|YP_001101086.1| spermidine/putrescine ABC trans... 139 1e-34 >gi|134093511|ref|YP_001098586.1| glutamate/aspartate transport ATP-binding protein gltL [Herminiimonas arsenicoxydans] Length = 241 Score = 254 bits (650), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 124/240 (51%), Positives = 167/240 (69%) Query: 1 MIKVNQLQKRFGQAHILRGIDCEIRAREVVCVIGPSGSGKSTFLRCLNGLEEVSDGDIFI 60 MI++ + K +G +L + +VV V GPSGSGKST ++ +NGLE G I + Sbjct: 1 MIEMKNVSKWYGSFQVLNDCTTSVAKGDVVVVCGPSGSGKSTLIKTVNGLEPFQKGSITV 60 Query: 61 EGVKLNDPKVDLNALRAELGMVFQRFNLFPHMTVLENLIMAPMQVKKMSRRQAVLVAEKL 120 +G+ + DPK +L ALR+ +GMVFQ F LFPH+++ ENL + ++V S +A K Sbjct: 61 DGISVGDPKTNLPALRSRIGMVFQNFELFPHLSIRENLTLGQIRVLGRSEEEAAERGLKY 120 Query: 121 LQKVGLLDKIDAFPNQLSGGQQQRVAIARALAMEPKVMLFDEPTSALDPELVGEVLSVMK 180 L +VGL+ + D FP QLSGGQQQRVAIARALAM+P MLFDEPTSALDPE++ EVL VM Sbjct: 121 LDRVGLIAQKDKFPGQLSGGQQQRVAIARALAMDPIAMLFDEPTSALDPEMINEVLDVMV 180 Query: 181 QLAEEGMTMVVVTHEMGFAREVSDRVFFIDQGVIMEEGPPQQVLGEPVHERTRDFLRKVL 240 LA++GMTM+VVTHEMGFAR+V++RV F+DQG I+E+ + G +R RDFL K++ Sbjct: 181 GLAQDGMTMMVVTHEMGFARKVANRVIFMDQGTIVEDCTKDEFFGTVRSDRARDFLAKII 240 >gi|134094078|ref|YP_001099153.1| sulfate permease A protein chromate resistance ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 355 Score = 147 bits (371), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 89/243 (36%), Positives = 140/243 (57%), Gaps = 10/243 (4%) Query: 2 IKVNQLQKRFGQAHILRGIDCEIRAREVVCVIGPSGSGKSTFLRCLNGLEEVSDGDIFIE 61 I+V + K+FG L + E A E+ ++GPSG GK+T LR + GLE+ G + ++ Sbjct: 3 IEVKNINKKFGNFVALNDVSLEFPAGELTALLGPSGCGKTTLLRIIAGLEQPDHGQVLLD 62 Query: 62 GVKLNDPKVDLNALRAELGMVFQRFNLFPHMTVLENLIMAPMQVKKMSRRQAVLVAE--- 118 G + V ++G VFQ + LF HMTV EN+ ++V+ + R + V + Sbjct: 63 GEDASARHVR----ERQVGFVFQHYALFKHMTVFENIAFG-LRVRPAATRPSESVIKEKV 117 Query: 119 -KLLQKVGLLDKIDAFPNQLSGGQQQRVAIARALAMEPKVMLFDEPTSALDPELVGEVLS 177 KLL+ V L D +P QLSGGQ+QR+A+ARALA+EP+V+L DEP ALD ++ E+ Sbjct: 118 TKLLELVQLDWLADRYPPQLSGGQRQRIALARALAVEPRVLLLDEPFGALDAKVRKELRR 177 Query: 178 VMKQLAEE-GMTMVVVTHEMGFAREVSDRVFFIDQGVIMEEGPPQQVLGEPVHERTRDFL 236 +++L +E +T + VTH+ A EV+D++ +++G + + G P+ V P FL Sbjct: 178 WLRRLHDELHVTSIFVTHDQEEALEVADQIVLMNKGHVEQIGAPKDVYNNPASPFVYGFL 237 Query: 237 RKV 239 V Sbjct: 238 GNV 240 >gi|134096365|ref|YP_001101440.1| phosphite import ATP-binding protein pxtA [Herminiimonas arsenicoxydans] Length = 262 Score = 145 bits (367), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 84/227 (37%), Positives = 130/227 (57%), Gaps = 7/227 (3%) Query: 1 MIKVNQLQKRFGQAHILRGIDCEIRAREVVCVIGPSGSGKSTFLRCLNGLEEVSDGDIFI 60 MI++N + R+G + LR ++ + ++G SG+GKST LRC+N + + S G I + Sbjct: 1 MIQLNDVSVRYGDTYALRSTSLKLHKGQFTVLLGASGAGKSTLLRCINMMCQPSAGTIDV 60 Query: 61 EGVKLNDPKVDLNALRAELGMVFQRFNLFPHMTVLENLIMAPMQVKKMSRRQAVLVAE-- 118 G+ L + L A R + GMVFQ+ L T L+N++M + R L E Sbjct: 61 VGLGLLQNRRVLQAHRRQTGMVFQQHQLIARRTALQNVLMGRLGYHTTLRSLFPLSQEEQ 120 Query: 119 ----KLLQKVGLLDKIDAFPNQLSGGQQQRVAIARALAMEPKVMLFDEPTSALDPELVGE 174 + L +VGLL K +QLSGGQQQRV IARAL +PK++L DEP ++LDP + Sbjct: 121 RIGLRALDRVGLLHKALTRVDQLSGGQQQRVGIARALTQQPKLILADEPVASLDPATSEK 180 Query: 175 VLSVMKQLA-EEGMTMVVVTHEMGFAREVSDRVFFIDQGVIMEEGPP 220 VL +++Q+ E+G++ VV H++ A + SDR+ + G +M + P Sbjct: 181 VLEILRQICKEDGISAVVSLHQVDLALKYSDRIVGLAHGKVMFDAVP 227 >gi|134093752|ref|YP_001098827.1| phosphate import ATP-binding protein [Herminiimonas arsenicoxydans] Length = 281 Score = 143 bits (361), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 87/245 (35%), Positives = 142/245 (57%), Gaps = 11/245 (4%) Query: 1 MIKVNQLQKRFGQAHILRGIDCEIRAREVVCVIGPSGSGKSTFLRCLNGLEEVSD----- 55 +++V L +G+ L I+ + +V+ IGPSG GKST LRC N + ++ D Sbjct: 34 VLQVKDLNLFYGKTQALFDINLNVPRGQVLAFIGPSGCGKSTLLRCFNRMNDLVDSCRVE 93 Query: 56 GDIFIEGVKLNDPKVDLNALRAELGMVFQRFNLFPHMTVLENLIMAPMQVKKMSRRQAVL 115 G++ ++G + + V++ LR +GMVFQ+ N FP T+ EN+ + +R Q Sbjct: 94 GEVIVDGRNVYERSVNVAELRRRVGMVFQKPNPFPK-TIYENVAYGLRLLGVKNRAQLDE 152 Query: 116 VAEKLLQKVGLLDKI-DAFPNQ---LSGGQQQRVAIARALAMEPKVMLFDEPTSALDPEL 171 V E+ L++ L D++ D + LSGGQQQR+ IARA+A+EP+V+L DEP SALDP Sbjct: 153 VVERSLRQAALWDEVKDRLHSSGLSLSGGQQQRLVIARAIALEPEVLLLDEPCSALDPIA 212 Query: 172 VGEVLSVMKQLAEEGMTMVVVTHEMGFAREVSDRVFFIDQGVIMEEGPPQQVLGEPVHER 231 ++ ++ L ++ T+V+VTH M A VSD F+ G ++E Q+ +P +++ Sbjct: 213 TAKIEDLLDDLKQK-YTIVIVTHNMQQAARVSDFTGFMFMGKLVEFSVTDQMFTQPTNKQ 271 Query: 232 TRDFL 236 T D++ Sbjct: 272 TMDYI 276 >gi|134096011|ref|YP_001101086.1| spermidine/putrescine ABC transporter ATP-binding subunit [Herminiimonas arsenicoxydans] Length = 366 Score = 139 bits (351), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 83/237 (35%), Positives = 131/237 (55%), Gaps = 6/237 (2%) Query: 1 MIKVNQLQKRFGQAHILRGIDCEIRAREVVCVIGPSGSGKSTFLRCLNGLEEVSDGDIFI 60 ++++ L +RFG ++ I I A E ++GPSG GK+T LR + G +E G I + Sbjct: 3 LLEIRNLTRRFGDNTVVDNISLSIEAGEFFTLLGPSGCGKTTLLRMIAGFDEPDAGKILL 62 Query: 61 EGVKLNDPKVDLNALRAELGMVFQRFNLFPHMTVLENLIMAPMQVKKMSRRQAVLVAEKL 120 +GV L + +R VFQ + LFPHMTV N I P+++ + + ++ Sbjct: 63 DGVDLTGVPPEQRVVRT----VFQNYALFPHMTVAGN-IAFPLEMANTPKSEIKQKVDEA 117 Query: 121 LQKVGLLDKIDAFPNQLSGGQQQRVAIARALAMEPKVMLFDEPTSALDPELVGEVLSVMK 180 L+ V L +P++LSGGQ+QRV+IARAL PK++L DEP SALD +L ++ + Sbjct: 118 LEDVRLTGFAARYPHELSGGQRQRVSIARALVTRPKLLLLDEPLSALDAQLREQMQIELI 177 Query: 181 QLAEE-GMTMVVVTHEMGFAREVSDRVFFIDQGVIMEEGPPQQVLGEPVHERTRDFL 236 L +E G+T V VTH+ A +S R+ +++G I + P ++ P DF+ Sbjct: 178 NLQKEVGITFVYVTHDQAEALALSHRIAVMNKGNIEQLDEPTRIYSYPRSRFVADFI 234 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.323 0.139 0.392 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 424,567 Number of extensions: 16513 Number of successful extensions: 240 Number of sequences better than 1.0e-08: 47 Number of HSP's gapped: 155 Number of HSP's successfully gapped: 50 Length of query: 240 Length of database: 1,000,347 Length adjustment: 79 Effective length of query: 161 Effective length of database: 740,042 Effective search space: 119146762 Effective search space used: 119146762 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 127 (53.5 bits)