BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0071.p
         (342 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096478|ref|YP_001101553.1| putative ABC transporter peripl...   291   4e-80

>gi|134096478|ref|YP_001101553.1| putative ABC transporter
           periplasmic substrate-binding protein [Herminiimonas
           arsenicoxydans]
          Length = 337

 Score =  291 bits (744), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 144/334 (43%), Positives = 217/334 (64%), Gaps = 6/334 (1%)

Query: 11  LRRLLTTTVAVSLLGAPLVARAE-GQLRIAEQFGIVYLLLNVAQDQQLIEKHGKAAGV-D 68
           LR L+ +     L+GA     AE  ++ IA+Q+GI YL L + ++ +L+EK  K AG+ D
Sbjct: 8   LRALIGSCF---LMGAIANVSAEVNKIGIAQQYGISYLPLMIMEENKLLEKAAKEAGLGD 64

Query: 69  IKVQWLKLSGGSAVNDALLSGSVDIAGAGVGPLLTIWDRTRGRQNVRGVASLGNFPYYLV 128
           I VQW K +GG+ +NDALLSG +  A  G+GP +T+W +T+    VR VA++ + P  L 
Sbjct: 65  ITVQWAKFAGGNVMNDALLSGDLQFASGGLGPFITLWAKTKDNIGVRAVAAMNSMPLLLN 124

Query: 129 SNNPKVKTIADFSDKDRIAVPAVGVSVQSRVLQLASAKLWGDAQYNRLDKISIAVPHPDA 188
           + NP +KT+ DF++KD+IA+PAV VS+Q+  LQ+A+ K +G  Q NRLDK ++   HPD 
Sbjct: 125 TRNPDIKTLQDFTEKDKIALPAVKVSIQAITLQMAAEKAFGSGQENRLDKFTVTQSHPDG 184

Query: 189 TAAIISGGTEITGHFGNPPFQEQELAGNPNAHIVLNSYDVLGGPSSATVLYATEKFRQDN 248
            AA++SG +EI  HF +PPFQ  EL   P  H V+NSY+V GGP +  V++A++KF   N
Sbjct: 185 MAAMLSGSSEINSHFTSPPFQYTEL-DRPGIHTVVNSYEVTGGPHTFNVVWASKKFVDAN 243

Query: 249 PKTYGAFLGALDEAARFIAANPEKAADIYLKVSQGNTDRKLLLQIIKNPEVQFKIAPQNT 308
           PKTY AFL A D +   I  + + AA+ Y++ S+     + + +++ +P ++F   P+NT
Sbjct: 244 PKTYAAFLKAFDSSIAMINKDKKAAAEFYIRASKSKESVESIEKMLNDPNIEFTTTPKNT 303

Query: 309 YGLAEFMHRVGAIKNKPASVKDYFFDDVHIQGGS 342
              A+FM+R+G +K KPAS KD FF +++   GS
Sbjct: 304 MKYADFMYRIGMVKVKPASWKDMFFPNMYNLPGS 337


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.317    0.135    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 671,981
Number of extensions: 27936
Number of successful extensions: 82
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 80
Number of HSP's successfully gapped: 1
Length of query: 342
Length of database: 1,000,347
Length adjustment: 82
Effective length of query: 260
Effective length of database: 730,157
Effective search space: 189840820
Effective search space used: 189840820
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 129 (54.3 bits)