BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0070.p
         (338 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096478|ref|YP_001101553.1| putative ABC transporter peripl...   308   3e-85

>gi|134096478|ref|YP_001101553.1| putative ABC transporter
           periplasmic substrate-binding protein [Herminiimonas
           arsenicoxydans]
          Length = 337

 Score =  308 bits (789), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 145/331 (43%), Positives = 216/331 (65%), Gaps = 2/331 (0%)

Query: 10  SFAALLASLITLGSAANAHAE-GSIRIAQQFGIGYLILDVVQDQKLIEKYGKQEGL-DIK 67
           S  AL+ S   +G+ AN  AE   I IAQQ+GI YL L ++++ KL+EK  K+ GL DI 
Sbjct: 7   SLRALIGSCFLMGAIANVSAEVNKIGIAQQYGISYLPLMIMEENKLLEKAAKEAGLGDIT 66

Query: 68  VEWTSLSGATGMNEALLAGALDVVSAGAPPALVLWDRTRGRQNVKAIASLGSMPNYLLSN 127
           V+W   +G   MN+ALL+G L   S G  P + LW +T+    V+A+A++ SMP  L + 
Sbjct: 67  VQWAKFAGGNVMNDALLSGDLQFASGGLGPFITLWAKTKDNIGVRAVAAMNSMPLLLNTR 126

Query: 128 NPQVKSIKDFSDKDRIAVPAAGVGFQSRTLQIETAKVYGKADFKRFDRITVSLSHPDATA 187
           NP +K+++DF++KD+IA+PA  V  Q+ TLQ+   K +G     R D+ TV+ SHPD  A
Sbjct: 127 NPDIKTLQDFTEKDKIALPAVKVSIQAITLQMAAEKAFGSGQENRLDKFTVTQSHPDGMA 186

Query: 188 ALIAGGSEINAHFSSPPFQYQALEHKNVHKVISSYDILGGPATFNVLYTTQKFHDDNPKT 247
           A+++G SEIN+HF+SPPFQY  L+   +H V++SY++ GGP TFNV++ ++KF D NPKT
Sbjct: 187 AMLSGSSEINSHFTSPPFQYTELDRPGIHTVVNSYEVTGGPHTFNVVWASKKFVDANPKT 246

Query: 248 YRAFYQALVEAAEFVRNNKDKAADTFIRVQKSKLSPQFVRRIVEDPEINFTVSPERSFVY 307
           Y AF +A   +   +  +K  AA+ +IR  KSK S + + +++ DP I FT +P+ +  Y
Sbjct: 247 YAAFLKAFDSSIAMINKDKKAAAEFYIRASKSKESVESIEKMLNDPNIEFTTTPKNTMKY 306

Query: 308 AEKLYELGILKNRASSWKDYFFEEAYAQPGS 338
           A+ +Y +G++K + +SWKD FF   Y  PGS
Sbjct: 307 ADFMYRIGMVKVKPASWKDMFFPNMYNLPGS 337


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.317    0.132    0.376 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 631,424
Number of extensions: 25194
Number of successful extensions: 60
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 59
Number of HSP's successfully gapped: 1
Length of query: 338
Length of database: 1,000,347
Length adjustment: 82
Effective length of query: 256
Effective length of database: 730,157
Effective search space: 186920192
Effective search space used: 186920192
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 129 (54.3 bits)