BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0069.p (289 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134096488|ref|YP_001101563.1| putative Sulfate-transporting A... 309 8e-86 gi|134093702|ref|YP_001098777.1| nitrate ABC transporter ATP-bin... 163 8e-42 gi|134094842|ref|YP_001099917.1| ABC transporter ATP-binding pro... 159 1e-40 gi|134096011|ref|YP_001101086.1| spermidine/putrescine ABC trans... 157 8e-40 gi|134094055|ref|YP_001099130.1| ABC transporter ATP-binding pro... 126 1e-30 >gi|134096488|ref|YP_001101563.1| putative Sulfate-transporting ATPase [Herminiimonas arsenicoxydans] Length = 262 Score = 309 bits (792), Expect = 8e-86, Method: Compositional matrix adjust. Identities = 146/248 (58%), Positives = 193/248 (77%), Gaps = 3/248 (1%) Query: 18 KPLLQVQHVSLQYRSATAVVQATHDVSFDVHTADRFVLLGPSGCGKSSLLKSVAGFLPPA 77 +PLL V+ V+LQY++ +V AT+ V F V+ +DRFVLLGPSGCGKS+LLK+V G++ P Sbjct: 6 QPLLDVRGVTLQYKTKEHLVTATYRVDFKVYKSDRFVLLGPSGCGKSTLLKAVGGYMMPT 65 Query: 78 AGDIRLDGQMVRQPGPDRIVVFQEFDQLPPWKTVLHNVMFPLLASRTLGKREAAERARHY 137 G++RL +++ +P DR++VFQEFDQLPPWKTV NVMFPLLAS L +EA ++A +Y Sbjct: 66 EGEMRLHDKVITKPWYDRMMVFQEFDQLPPWKTVKQNVMFPLLASGKLKGKEAEDKAMYY 125 Query: 138 LDKVGLAHFANAYPHTLSGGMKARVAIARALAMQPKMLLMDEPFAALDALTRRKMQEELL 197 ++KV L+ FA+ YPH LSGGMK RVAIAR +AM+P +LLMDEP+AALDALTR+KMQ+ELL Sbjct: 126 IEKVNLSKFADHYPHMLSGGMKQRVAIARGMAMEPDILLMDEPYAALDALTRKKMQDELL 185 Query: 198 ALWEEVRFTLLFVTHSIEEALVVGNRILLLSPHPGRVRAEINSHQYDLGSLGGVGFQQTA 257 LW++ FT+LFVTHSI EA+ +GNRILLLSPHPG+V AE+NS D G Sbjct: 186 QLWDDTHFTVLFVTHSIAEAVKIGNRILLLSPHPGQVTAELNSTGEDTIDADG---NCLT 242 Query: 258 QRIHRLLF 265 ++I+++LF Sbjct: 243 EKINKMLF 250 >gi|134093702|ref|YP_001098777.1| nitrate ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 271 Score = 163 bits (413), Expect = 8e-42, Method: Compositional matrix adjust. Identities = 89/223 (39%), Positives = 124/223 (55%), Gaps = 7/223 (3%) Query: 20 LLQVQHVSLQYRSATAVVQATHDVSFDVHTADRFVLLGPSGCGKSSLLKSVAGFLPPAAG 79 + +QH + + + V A D++ V + L+G SGCGKS+LL +AG G Sbjct: 8 FIDIQHAEMSFHTKKGVFNALTDINLTVAKGEFITLIGHSGCGKSTLLNLIAGLTQSTGG 67 Query: 80 DIRLDGQMVRQPGPDRIVVFQEFDQLPPWKTVLHNVMFPLLASRTLGKREAAE----RAR 135 + + + P P+R VVFQ LP W T NV L R GK E R R Sbjct: 68 MLLCGNREIAGPSPERAVVFQNHSLLP-WLTCYENVY--LAVERVFGKVEGKAKLRARTR 124 Query: 136 HYLDKVGLAHFANAYPHTLSGGMKARVAIARALAMQPKMLLMDEPFAALDALTRRKMQEE 195 L VGL H P+ +SGGMK RV IARAL+M+PK+LLMDEPF ALDALTR +Q+E Sbjct: 125 AALSLVGLTHAEQKRPNEISGGMKQRVGIARALSMEPKVLLMDEPFGALDALTRAHLQDE 184 Query: 196 LLALWEEVRFTLLFVTHSIEEALVVGNRILLLSPHPGRVRAEI 238 LL + T++ VTH ++EA+++ ++I++L+ P EI Sbjct: 185 LLKIVAATGSTVVMVTHDVDEAVLLSDKIVMLTNGPSATIGEI 227 >gi|134094842|ref|YP_001099917.1| ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 434 Score = 159 bits (403), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 92/223 (41%), Positives = 133/223 (59%), Gaps = 6/223 (2%) Query: 20 LLQVQHVSLQYRSATAV-VQATHDVSFDVHTADRFVLLGPSGCGKSSLLKSVAGFLPPAA 78 L++++ V+ +++A +V+F + + LLG SG GKS+LL+ +AG + Sbjct: 6 LIELKGVAKSFKTADGTPCSVLENVNFALAEGEIVALLGKSGSGKSTLLRIMAGLIAADQ 65 Query: 79 GDIRLDGQMVRQPGPDRIVVFQEFDQLPPWKTVLHNVMFPLLASRTLGKREAAERARHYL 138 G + GQ + P +VFQ F L PW TV NV L A + + E +RA L Sbjct: 66 GTAKYRGQEIYSPVSGIAMVFQSF-ALFPWLTVQQNVELGLEA-QGMAPDEREKRADAML 123 Query: 139 DKVGLAHFANAYPHTLSGGMKARVAIARALAMQPKMLLMDEPFAALDALTRRKMQEELLA 198 D +GLA F A P LSGGMK RV IAR L P +LLMDE F+ALD LT +++++L Sbjct: 124 DLIGLAGFGGALPRELSGGMKQRVGIARGLVTGPDVLLMDEAFSALDVLTGETLRDDILE 183 Query: 199 LWEEVRF---TLLFVTHSIEEALVVGNRILLLSPHPGRVRAEI 238 +WEE R +L V+H+IEEA+++ +RIL+LS PGR+R+EI Sbjct: 184 MWEEKRIPTKGILIVSHNIEEAVMMADRILVLSSSPGRIRSEI 226 >gi|134096011|ref|YP_001101086.1| spermidine/putrescine ABC transporter ATP-binding subunit [Herminiimonas arsenicoxydans] Length = 366 Score = 157 bits (396), Expect = 8e-40, Method: Compositional matrix adjust. Identities = 91/212 (42%), Positives = 131/212 (61%), Gaps = 9/212 (4%) Query: 20 LLQVQHVSLQYRSATAVVQATHDVSFDVHTADRFVLLGPSGCGKSSLLKSVAGFLPPAAG 79 LL++++++ ++ T V ++S + + F LLGPSGCGK++LL+ +AGF P AG Sbjct: 3 LLEIRNLTRRFGDNTVV----DNISLSIEAGEFFTLLGPSGCGKTTLLRMIAGFDEPDAG 58 Query: 80 DIRLDG-QMVRQPGPDRIV--VFQEFDQLPPWKTVLHNVMFPLLASRTLGKREAAERARH 136 I LDG + P R+V VFQ + L P TV N+ FPL + T K E ++ Sbjct: 59 KILLDGVDLTGVPPEQRVVRTVFQNY-ALFPHMTVAGNIAFPLEMANT-PKSEIKQKVDE 116 Query: 137 YLDKVGLAHFANAYPHTLSGGMKARVAIARALAMQPKMLLMDEPFAALDALTRRKMQEEL 196 L+ V L FA YPH LSGG + RV+IARAL +PK+LL+DEP +ALDA R +MQ EL Sbjct: 117 ALEDVRLTGFAARYPHELSGGQRQRVSIARALVTRPKLLLLDEPLSALDAQLREQMQIEL 176 Query: 197 LALWEEVRFTLLFVTHSIEEALVVGNRILLLS 228 + L +EV T ++VTH EAL + +RI +++ Sbjct: 177 INLQKEVGITFVYVTHDQAEALALSHRIAVMN 208 >gi|134094055|ref|YP_001099130.1| ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 376 Score = 126 bits (317), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 81/213 (38%), Positives = 116/213 (54%), Gaps = 11/213 (5%) Query: 19 PLLQVQHVSLQYRSATAVVQATHDVSFDVHTADRFVLLGPSGCGKSSLLKSVAGFLPPAA 78 P L ++ + + YR + + H +SF + LLG SGCGK+++L+++AGF P Sbjct: 13 PHLSLESIRVGYRLGQQMHEIVHSLSFALQRGQIGCLLGQSGCGKTTVLRAIAGFEPLTE 72 Query: 79 GDIRLDGQMVRQ------PGPDRI-VVFQEFDQLPPWKTVLHNVMFPLLASRTLGKREAA 131 G I L G+ + P +I VVFQ++ L P +V NV F L R L E Sbjct: 73 GSITLGGKEISNAHFTATPETRQIGVVFQDY-ALFPHLSVADNVGFGL---RKLAAPERQ 128 Query: 132 ERARHYLDKVGLAHFANAYPHTLSGGMKARVAIARALAMQPKMLLMDEPFAALDALTRRK 191 R L VGLA +PH LSGG + RVA+ARALA QP +LL+DEPF+ LD R + Sbjct: 129 ARIAALLTLVGLASQGKKFPHELSGGQQQRVALARALAPQPDLLLLDEPFSNLDVDLRER 188 Query: 192 MQEELLALWEEVRFTLLFVTHSIEEALVVGNRI 224 + E+ + +EV T + VTH EA + ++I Sbjct: 189 LASEVRDILKEVGTTAVLVTHDQHEAFAIADQI 221 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.322 0.135 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 528,401 Number of extensions: 20923 Number of successful extensions: 201 Number of sequences better than 1.0e-08: 43 Number of HSP's gapped: 154 Number of HSP's successfully gapped: 45 Length of query: 289 Length of database: 1,000,347 Length adjustment: 81 Effective length of query: 208 Effective length of database: 733,452 Effective search space: 152558016 Effective search space used: 152558016 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 128 (53.9 bits)