BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0067.p
         (190 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093401|ref|YP_001098476.1| methylated-DNA--protein-cystein...   139   8e-35
gi|134093691|ref|YP_001098766.1| putative methylated-DNA-[protei...    80   6e-17

>gi|134093401|ref|YP_001098476.1| methylated-DNA--protein-cysteine
           methyltransferase [Herminiimonas arsenicoxydans]
          Length = 163

 Score =  139 bits (350), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 70/155 (45%), Positives = 98/155 (63%), Gaps = 2/155 (1%)

Query: 10  SPAGLLKLVAKGDHLAAILWEDDDALRVRLGEMVEDEDRPV--LLETEQQLREYFAGERE 67
           SP G+L + A    +  I +E+    + + G +       +  L     QL EYFA +R 
Sbjct: 9   SPVGILLIAATDAGICGIYFEEHKHFKGKDGWLQTPTQSALRHLKNAAMQLDEYFAAKRT 68

Query: 68  SFDLPLHFEGTEFQRQVWSALLDIPYGQTRTYLDIARQLGNEKAVRAVGAANGRNPISII 127
            FD+ L   GT FQR+VWSAL  IP+GQ+ +Y   A+ LGN KA+RAVG+A G+NP+SII
Sbjct: 69  RFDVALDLSGTAFQREVWSALNAIPFGQSVSYAQHAQGLGNPKALRAVGSAIGKNPVSII 128

Query: 128 APCHRVIGSGGELTGFAGGLHVKKLLLAIEGISTE 162
            PCHRVIGS G +TG+AGG+  K+ LLA+E ++ +
Sbjct: 129 VPCHRVIGSAGAVTGYAGGVERKRFLLALESVAVK 163


>gi|134093691|ref|YP_001098766.1| putative
           methylated-DNA-[protein]-cysteine S-methyltransferase
           [Herminiimonas arsenicoxydans]
          Length = 184

 Score = 80.1 bits (196), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 51/124 (41%), Positives = 71/124 (57%), Gaps = 10/124 (8%)

Query: 44  EDEDRPVLLETEQQLREYFAGERESFDLPLHFEGTEFQRQVWSALLDIPYGQTRTYLDIA 103
           +D   PV  +   Q+  Y +     FDLPL   GT FQ++VW+A+ +IP G+  TY DIA
Sbjct: 62  KDAIDPVAQKAAVQVERYLSDPDFHFDLPLAPIGTPFQQKVWAAIGEIPRGKVLTYGDIA 121

Query: 104 RQLGNEKAVRAVGAANGRNPISIIAPCHRVIGSGGELTGFA-----GGLH--VKKLLLAI 156
           R++  + A RAVG A G N   ++ PCHRV  + G L GF+      G H  VK+ LLA 
Sbjct: 122 RRV--QSAPRAVGQACGANWFPLVIPCHRVTAATG-LGGFSHHDDETGFHVGVKRWLLAH 178

Query: 157 EGIS 160
           E ++
Sbjct: 179 EKVA 182


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.319    0.139    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 378,712
Number of extensions: 15733
Number of successful extensions: 35
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 34
Number of HSP's successfully gapped: 2
Length of query: 190
Length of database: 1,000,347
Length adjustment: 77
Effective length of query: 113
Effective length of database: 746,632
Effective search space: 84369416
Effective search space used: 84369416
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 126 (53.1 bits)