BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0063.p
         (401 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096021|ref|YP_001101096.1| threonine deaminase [Herminiimo...   167   7e-43

>gi|134096021|ref|YP_001101096.1| threonine deaminase [Herminiimonas
           arsenicoxydans]
          Length = 507

 Score =  167 bits (424), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 135/410 (32%), Positives = 210/410 (51%), Gaps = 17/410 (4%)

Query: 1   MTTLNDIQAAAQRLQGQILETPCVESRTLSQIVGAQVFLKFENLQFTASFKERGACNKMV 60
           MTT    +    R+    +E+P   + TLSQ  G Q++ K E++Q   SFK RGA NKM 
Sbjct: 1   MTTDYLKKILTARVYDVAVESPLELAPTLSQRFGNQIYFKREDIQSVFSFKLRGAYNKMA 60

Query: 61  DVAASEAGARGVVAMSAGNHAQGVAYHAQRLGLPATIVMPRFTPGVKIERTRGFGANVVL 120
            +  ++   RGV+  SAGNHAQGVA  A RLG  A IVMP  TP VKIE  +  G  VVL
Sbjct: 61  HLPPAQM-KRGVICASAGNHAQGVALSAARLGCRAVIVMPTTTPSVKIEAVKARGGEVVL 119

Query: 121 HGDTLEAARTHAYKLAEKEGLTFVHPYDDEAIIAGQGTVALEMM-QAVPDLDCLVVAIGG 179
            GD+   A  HA  L +K  LTFVHP+DD  +IAGQGT+ +E++ Q    +  + V IGG
Sbjct: 120 FGDSYSDAYQHALTLEKKLKLTFVHPFDDPDVIAGQGTIGMEILRQHSGPIHAIFVPIGG 179

Query: 180 GGLLAGMAVAARALKPEIEIVGVQTRRFPTMVNAVKGTEHPVGAST--IAEGIAVGTPGT 237
           GGL+AG+    +A++P+I+I+GVQT     M  +++             A+G AV   G 
Sbjct: 180 GGLIAGIGAYVKAVRPDIKIIGVQTVDSDAMARSLQSNRRVTMTDVGLFADGTAVKLVGE 239

Query: 238 LTRAIIAREANELLLVDEGDIEQAVLMLLEIEKTLVEGAGAAGLAALLRYPDR------- 290
            T  +     ++++LV   ++  A+  + +  ++++E +GA  +A    Y +R       
Sbjct: 240 ETFRLAKLYVDDIILVSTDEVCSAIKDVFQDTRSILEPSGALSVAGAKAYIERAHADKKP 299

Query: 291 FRGKRVGLVLSGGNIDPLLLTAIIERGMVRAGRLARVKVSSRDVPGTLARITGIVAEAGA 350
            + + +  + SG N++   L  + E   V A R     V+  +  G+  R   +V     
Sbjct: 300 IKNETLITIASGANMNFDRLRFVAEMADVGAAREGVFAVTIPEERGSFKRFCELVGP--R 357

Query: 351 NIDEVHHQRAFTLLAAQNVDIELVLQTRGRAHLAQVLQALRVAGFEAEEL 400
           N+ E +++    L  A+   I + LQ   R    ++ +     GF+  +L
Sbjct: 358 NVTEFNYR----LSDAKQAHIFVGLQIADRDEAGKIARRFEKHGFKTLDL 403


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.320    0.136    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 653,067
Number of extensions: 24536
Number of successful extensions: 98
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 96
Number of HSP's successfully gapped: 1
Length of query: 401
Length of database: 1,000,347
Length adjustment: 84
Effective length of query: 317
Effective length of database: 723,567
Effective search space: 229370739
Effective search space used: 229370739
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)