BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0062.p
         (609 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094723|ref|YP_001099798.1| ferrous iron transport protein ...   746   0.0  

>gi|134094723|ref|YP_001099798.1| ferrous iron transport protein B
           [Herminiimonas arsenicoxydans]
          Length = 611

 Score =  746 bits (1927), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 394/602 (65%), Positives = 468/602 (77%), Gaps = 4/602 (0%)

Query: 7   NIALVGNPNCGKTALFNQLTGARQKVANYAGVTVERKSGAFTAPSGRQVRVVDLPGAYSL 66
            IALVGNPNCGKTALFNQLTG+RQKVANYAGVTVERK G FTAPSGR   ++DLPGAYSL
Sbjct: 5   RIALVGNPNCGKTALFNQLTGSRQKVANYAGVTVERKEGRFTAPSGRIFNLLDLPGAYSL 64

Query: 67  QSVSPDERVTQAVLQGRYPGEAVPDLIVCVADATNLRLHLRFVLEVRRLGLPMVLALNMM 126
            + SPDE +T+ +  GR  GEA+P+LIVCVADATNLRLHLRFVLEV+RLG PMVLALNMM
Sbjct: 65  DATSPDEVITRDICLGRIAGEALPELIVCVADATNLRLHLRFVLEVQRLGRPMVLALNMM 124

Query: 127 DAAARRGIRIDVAALSQRLGMPVIETVAVKRGGARALVDAIDVKQVPAAAAAVP-PIDDL 185
           DAA +RGI ID   L ++LGM VIETVA++  GA+ALV  +D   +P A  A      DL
Sbjct: 125 DAARKRGISIDREELQRQLGMDVIETVAIRSDGAKALVAHLDGMALPEAVPATGGSAADL 184

Query: 186 HVEVRAILAATVVMPAATDRRDDAIDRIVLHPVLGLLVLALTMFLVFQAVYAIGKPMTDA 245
           H +VR ILAA V MP AT   D+ IDR VLHPV GL +LA  MF +FQAV++  +P+ D 
Sbjct: 185 HAQVRKILAAAVTMPRATAMNDEMIDRWVLHPVFGLAILAAVMFFIFQAVFSWAEPLMDG 244

Query: 246 IADGFGTLGGVVGAWLPEGPLRGLVTDGLLAGLGTVLGFLPQILVLFFFILLLEESGYLP 305
           I  G   +G    + LP+G LR L+ DG+ AGLG VL FLPQIL+LF FIL+LEESGYLP
Sbjct: 245 ITGGVTIVGQWFASTLPDGLLRSLIVDGIFAGLGAVLVFLPQILILFLFILVLEESGYLP 304

Query: 306 RAAFVLDKLMVSVGLSGRSFIPLLSSFACAIPGIMGTRSITDPRDRLATILVAPLMTCSA 365
           RAAF+LD++M   GL+GRSFIPLLSSFACAIPGIM TRSI DPRDRL TILVAPLMTCSA
Sbjct: 305 RAAFLLDRMMFKAGLTGRSFIPLLSSFACAIPGIMATRSIQDPRDRLTTILVAPLMTCSA 364

Query: 366 RLPVYALLIGAFIPHHPVLGIFNLQGLALFCLYVAGIAAAMLVAWVAKRIGRSRQERALL 425
           RLPVY LLI AFIP   V  +FNLQG+ LF LYVAGI +A  VAWV KR+ + + E ALL
Sbjct: 365 RLPVYTLLIAAFIPATTVWNVFNLQGIVLFVLYVAGIVSAFAVAWVIKRMRKDKSEHALL 424

Query: 426 MELPSYRLPHWRDIALGLWERGAIFLKRLTGVMLALTVLMWAICTFPSPPADATRAAIDY 485
           MELPSYRLP  R+IA+GLWER  IFL+R+T ++L+LTVL+W + TFP+PPA AT  AIDY
Sbjct: 425 MELPSYRLPGVRNIAIGLWERALIFLRRVTTIILSLTVLLWFLSTFPAPPAGATLPAIDY 484

Query: 486 SIAGYIGHSLQYLFAPLGFNWQISLSLIPAFAARETAVATLATVYAVGGEEGAALQQ--- 542
           S+AG IG  L+++FAP+GFNWQI ++LIP  AARE AV+ L TVYA+ G E A   Q   
Sbjct: 485 SLAGQIGRLLEHVFAPVGFNWQICIALIPGLAAREVAVSALGTVYAMSGSEDAVAAQLGP 544

Query: 543 ALATHISLASALSLMVWFAFAPQCMSTLAIIRRETQSWRLVALSFGYMFVLAYVASFLTY 602
            +A   SLA+AL+L+ W+ FAPQCMSTLA+IRRET SWR+VA+S GY+F LAY+A+FLTY
Sbjct: 545 VIAAQWSLATALALLAWYVFAPQCMSTLAVIRRETNSWRVVAVSAGYLFGLAYLAAFLTY 604

Query: 603 RI 604
           +I
Sbjct: 605 QI 606


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.327    0.140    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 1,029,910
Number of extensions: 39544
Number of successful extensions: 238
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 236
Number of HSP's successfully gapped: 1
Length of query: 609
Length of database: 1,000,347
Length adjustment: 87
Effective length of query: 522
Effective length of database: 713,682
Effective search space: 372542004
Effective search space used: 372542004
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 131 (55.1 bits)