BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0059.p (339 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134093618|ref|YP_001098693.1| putative oxidoreductase [Hermin... 91 1e-19 gi|134095231|ref|YP_001100306.1| glutathione-dependent formaldeh... 68 8e-13 gi|134093826|ref|YP_001098901.1| quinone oxidoreductase, NADPH-d... 62 5e-11 gi|134094820|ref|YP_001099895.1| putative alcool dehydrogenase w... 57 1e-09 >gi|134093618|ref|YP_001098693.1| putative oxidoreductase [Herminiimonas arsenicoxydans] Length = 325 Score = 90.5 bits (223), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 87/346 (25%), Positives = 148/346 (42%), Gaps = 34/346 (9%) Query: 5 MRRWRLHQFGKQH-LQLETLPIEQPAPGQILVRVRAVALNYRDKMNIDSGSGGPQVQLPF 63 MR + Q G L+L P+ +P G++L++V A +N D P+ Sbjct: 1 MRAIEITQPGPPDVLKLCERPMPEPKAGELLIKVHAAGINRPDVWQRLGSYAVPKGASDI 60 Query: 64 TPASDMAGEVVAVGAGVRCFAPGARVISTFWGGWLDGHWPPQAVALGAPGPGMLAQYVLL 123 P ++AGEVV F G V + GG A+Y Sbjct: 61 -PGLEIAGEVVGGDLADSGFKIGDMVCALAQGGGY-------------------AEYCTA 100 Query: 124 DEDWAVAAPLTLSDAQASTLPCAGLTAWTALIEQGQLHAGQTVVLQG-TGGVALFGLQLA 182 + + P L +A++LP T W+ + ++ L +T+++QG T G+ + +Q+A Sbjct: 101 PVEQCLPIPKGLDVVEAASLPETFFTVWSNVFDRVGLTGNETLLVQGGTSGIGVTAIQIA 160 Query: 183 AAQGARTIVISGDAGKLERALAMGATHGILRSLHPQWQHQVREMTQGRGADHVLELVGGE 242 A G R +G K +GA GI + V+ T G+G D +L+++GG+ Sbjct: 161 TALGHRVFATAGSDEKCRACEVLGAERGINYKTE-DFVEVVKAATNGKGVDVILDIIGGD 219 Query: 243 NVERSLQALTQGGRLSLIGLLGDMRLQASSIPLLLGRQSIQGIG-----VGHRRALEDLV 297 V R + L GRL I L G + S +++ R +I G V + A+ D + Sbjct: 220 YVAREINCLADDGRLVFIALAGGNKATLSLGQVMMRRLTITGSTLRARPVAFKAAIADQL 279 Query: 298 RA-----VDQLGLVPMVEQEYGFAELPEALAHLERGA-FGKVVVRV 337 R ++ + P+V Q + + +A A +E GK+V++V Sbjct: 280 RTKVWPLIEAGKIKPVVYQTFALEDAAQAHALMESSTHIGKIVLKV 325 >gi|134095231|ref|YP_001100306.1| glutathione-dependent formaldehyde dehydrogenase [Herminiimonas arsenicoxydans] Length = 369 Score = 67.8 bits (164), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 89/357 (24%), Positives = 142/357 (39%), Gaps = 41/357 (11%) Query: 18 LQLETLPIEQPAPGQILVRVRAVALNYRDKMNIDSGSGGPQVQLPFTPASDMAGEVVAVG 77 L++ + +E P G++L+++ + + D + P+ P + AG VV VG Sbjct: 15 LEIVEIDVEPPRKGEVLIKITNTGVCHTDAFTLSGDD--PEGLFPVVLGHEGAGIVVEVG 72 Query: 78 AGVRCFAPGARVISTFWGGWLDGHWPPQ-----AVALGAP-GPGM--------------L 117 GV PG VI + + + VA+ A G G+ L Sbjct: 73 EGVTSVKPGDHVIPLYTAECGECLFCKSGKTNLCVAVRATQGKGLMPDGTTRFSYNGQPL 132 Query: 118 AQYVLLD--EDWAVAAPLTLSDAQASTLP-------CAGLTAWTALIEQGQLHAGQTVVL 168 Y+ ++ V A ++L+ P C T A+ ++ G +V + Sbjct: 133 YHYMGCSTFSEYTVVAEVSLAKINPDANPEHVCLLGCGVTTGIGAVHNTAKVQPGDSVAI 192 Query: 169 QGTGGVALFGLQLA-AAQGARTIVISGDAGKLERALAMGATHGILRSLHPQWQHQVREMT 227 G GG+ L +Q A A+ R I I + K E A GAT + + H+V Sbjct: 193 FGLGGIGLAAIQGARQAKAGRIIAIDTNPAKFELARTFGATECLNPKDFDKPIHEVLIEM 252 Query: 228 QGRGADHVLELVGGENVERS-LQALTQG-GRLSLIGLLGDMR-LQASSIPLLLGRQ---S 281 G G DH E +G NV RS L+A +G G+ +IG+ G + + L+ GR S Sbjct: 253 TGWGVDHTFECIGNVNVMRSALEAAHRGWGQSIVIGVAGAGKEISTRPFQLVTGRTWKGS 312 Query: 282 IQGIGVGHRRALEDLVRAV--DQLGLVPMVEQEYGFAELPEALAHLERGAFGKVVVR 336 G GV R L +V ++ L P V G E+ A + G + V+ Sbjct: 313 AFG-GVKGRTQLPGMVEDAMKGEIDLAPFVTHTMGLDEINHAFDLMHEGKSIRTVIH 368 >gi|134093826|ref|YP_001098901.1| quinone oxidoreductase, NADPH-dependent [Herminiimonas arsenicoxydans] Length = 324 Score = 61.6 bits (148), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 75/259 (28%), Positives = 107/259 (41%), Gaps = 26/259 (10%) Query: 6 RRWRLHQFGKQHLQLETLPIEQPA--PGQILVRVRAVALNYRDKMNIDSGSGGPQVQLPF 63 + R+++ G + +E L +E A PG+ L+ A LNY D + +G LP Sbjct: 3 KAIRINKTGGPEV-MEYLDVELAAAGPGEALIHQMACGLNYID---VYFRTGLYPQTLPA 58 Query: 64 TPASDMAGEVVAVGAGVRCFAPGARVISTFWGGWLDGHWPPQAVALGAPGPGMLAQYVLL 123 + AG V AVG GV PG RV + GG PG A+ +L Sbjct: 59 GLGMEGAGVVAAVGEGVTHVKPGDRV--AYAGGP----------------PGAYAESRVL 100 Query: 124 DEDWAVAAPLTLSDAQASTLPCAGLTAWTALIEQGQLHAGQTVVLQ-GTGGVALFGLQLA 182 V P ++ + + GLTA L +L G+T++ GGV L Q A Sbjct: 101 PAKVLVKLPASIDFETGAAMMLQGLTAQYLLRRTFRLQGGETILFHAAAGGVGLIACQWA 160 Query: 183 AAQGARTIVISGDAGKLERALAMGATHGILRSLHPQWQHQVREMTQGRGADHVLELVGGE 242 A G I G K A A G TH I + + +V+E+T G G V + +G + Sbjct: 161 RALGVTMIGTVGSDEKAALAKAHGCTHTINYNTE-NFVERVKEITHGAGVPVVYDSIGKD 219 Query: 243 NVERSLQALTQGGRLSLIG 261 SL L+ G L G Sbjct: 220 TFIGSLDCLSPMGMLVSYG 238 >gi|134094820|ref|YP_001099895.1| putative alcool dehydrogenase with NAD(P)-binding [Herminiimonas arsenicoxydans] Length = 352 Score = 57.0 bits (136), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 75/306 (24%), Positives = 131/306 (42%), Gaps = 42/306 (13%) Query: 31 GQILVRVRAVALNYRDKMNIDSGSGGPQVQLPFTPASDMAGEVVAVGAGVRCFAPGARVI 90 +++ + + + D N + GG P P ++ G V +VG V F G +V Sbjct: 30 NDVVIDILYCGVCHSDIHNARNDWGG--AVYPMVPGHEIIGRVASVGVNVTRFKVGDKVG 87 Query: 91 -------------------------STFWGGWLDGHWPPQAVALGAPGPGMLAQYVLLDE 125 STF +D H P G ++ +++ + Sbjct: 88 VGCMVDSCQHCAACQKNLEQYCAEGSTFTYNAIDRHD-------HMPTYGGYSERIVVSD 140 Query: 126 DWAVAAPLTLSDAQASTLPCAGLTAWTALIEQGQLHAGQTVVLQGTGGVALFGLQLAAAQ 185 + + P L A A+ L CAG+T W+ L ++ G V + G GG+ GL+LA A Sbjct: 141 KFVLKVPDGLDLAGAAPLLCAGITTWSPL-RHWKVGKGSKVAVVGLGGLGHMGLKLANAL 199 Query: 186 GARTIVISGDAGKLERALAMGATHGILRSLHPQWQHQVREMTQGRGADHVLELVGG-ENV 244 GA + + GK + A +GA H +L + Q H + GR D +++ V ++ Sbjct: 200 GAEVTLFTRSPGKEQDARRLGAHHVVLSTDAAQ-MHAI----NGR-FDLIIDTVPYIHDI 253 Query: 245 ERSLQALTQGGRLSLIGLLGDMRLQASSIPLLLGRQSIQGIGVGHRRALEDLVRAVDQLG 304 + L+ G L L+G LG + +S P++LGR+S+ G +G ++++ Q G Sbjct: 254 NPYIPTLSIDGTLVLVGYLGGLEPMLNSAPMILGRKSVAGSLIGGIAETQEMLDFCGQHG 313 Query: 305 LVPMVE 310 + +E Sbjct: 314 ITSDIE 319 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.320 0.137 0.415 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 644,604 Number of extensions: 25671 Number of successful extensions: 102 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 100 Number of HSP's successfully gapped: 4 Length of query: 339 Length of database: 1,000,347 Length adjustment: 82 Effective length of query: 257 Effective length of database: 730,157 Effective search space: 187650349 Effective search space used: 187650349 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)