BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0058.p (308 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095507|ref|YP_001100582.1| putative transcriptional regula... 199 2e-52 gi|134093609|ref|YP_001098684.1| putative transcriptional regula... 162 3e-41 gi|134094015|ref|YP_001099090.1| LysR family transcriptional reg... 151 5e-38 gi|134094924|ref|YP_001099999.1| transcriptional regulator [Herm... 122 2e-29 gi|134094407|ref|YP_001099482.1| transcriptional regulator [Herm... 102 2e-23 >gi|134095507|ref|YP_001100582.1| putative transcriptional regulator [Herminiimonas arsenicoxydans] Length = 287 Score = 199 bits (505), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 109/289 (37%), Positives = 171/289 (59%), Gaps = 7/289 (2%) Query: 7 IAVFIQAVEAGSFIRAAQRLHLSRSAVGKSIARLEERLGVRLFLRNTRSQSLTEEGRAYY 66 + F+ VEA SF A RL +S++ V K + LE+ LG RL R TR SLTE G AYY Sbjct: 1 MKTFVAVVEAESFTAAGARLDISKALVSKYVGILEDHLGTRLLNRTTRRLSLTESGLAYY 60 Query: 67 QRCLRALEELESGQALVAEGRCEPTGRVHISSPVLFGRMCVAPVLVELARRWPQLDITAS 126 +RCL+ L +++ + + A+ P G + ++ PV FG + +AP+L E RR+P++ + + Sbjct: 61 ERCLQILADVDEAEQVAAQSAAMPRGTLKVAMPVSFGTVRIAPLLTEYMRRYPEVRLDIA 120 Query: 127 FTDRRVDLVEEGVDLVLRSGPLPDTSHLVARKMGVQTMMLCASPQYLADHGRPRHFSDLA 186 DRRVDL+E+G DL +R G LP+ S L+ARK+ ++LCASP YL HG P+ DL Sbjct: 121 LADRRVDLIEDGYDLAIRVGNLPE-SGLIARKLATDRIVLCASPAYLQVHGAPQTPEDLK 179 Query: 187 RHHAILYGKTTG---WPIRDEEGKVRMAP-VTSRLHFDDLEAIAAATVAGAGLAHLPCWL 242 +H + Y ++ W +GK R A V + ++ + + A + GAGL P ++ Sbjct: 180 QHACLNYSYSSSGDEWVF--GKGKTRAAVRVDGPMRANNGDMLRLAALDGAGLIWQPHFI 237 Query: 243 ISTHVKAGRLVKLMPEESFATIDMHLAWSPTRHLPLRIRTVIDALAAAL 291 ++ V+AGRLV+LM +ES + ++ + +HL ++RT +D L A + Sbjct: 238 VADDVQAGRLVELMKDESDTELGIYAIYPSRKHLSAKVRTFVDYLVACM 286 >gi|134093609|ref|YP_001098684.1| putative transcriptional regulator [Herminiimonas arsenicoxydans] Length = 301 Score = 162 bits (409), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 96/291 (32%), Positives = 151/291 (51%), Gaps = 6/291 (2%) Query: 1 MDSFNGIAVFIQAVEAGSFIRAAQRLHLSRSAVGKSIARLEERLGVRLFLRNTRSQSLTE 60 MD I F+ AVE SF AA L ++ VG+ I LE+RLGVRL R+TR +LTE Sbjct: 1 MDKLKQIEAFVMAVEHSSFAAAALALQVTPVMVGRRIDALEKRLGVRLLHRSTRRLALTE 60 Query: 61 EGRAYYQRCLRALEELESGQALVAEGRCEPTGRVHISSPVLFGRMCVAPVLVELARRWPQ 120 EG Y + C + L EL+ ++ ++ G + +G + IS+P FGR VAP + P Sbjct: 61 EGSVYLEHCRKMLSELDQAESTLSAGHNKVSGHLIISAPASFGRQHVAPYAQNFLEQHPG 120 Query: 121 LDITASFTDRRVDLVEEGVDLVLRSGPLPDTSHLVARKMGVQTMMLCASPQYLADHGRPR 180 L ++ + TDR VDLV+EG D+ +R G D + VA K+ ++C +P Y HG+P+ Sbjct: 121 LKMSFNLTDRVVDLVQEGYDMGIRIGGTIDPN-FVAIKLAANKRVVCGTPDYFKKHGKPK 179 Query: 181 HFSDLARHHAILY----GKTTGWPIRDEEGKVRMAPVTSRLHFDDLEAIAAATVAGAGLA 236 DLA+H+ + + G+ GW + GK L +D E + G G+A Sbjct: 180 TLDDLAKHNCLAFNLQGGQQRGWYF-NHRGKTVSVRAQGSLDCNDGELLHRWMSEGLGIA 238 Query: 237 HLPCWLISTHVKAGRLVKLMPEESFATIDMHLAWSPTRHLPLRIRTVIDAL 287 W I + +++G L ++ + + D+ + R++P ++R I L Sbjct: 239 WRSVWEIQSQLESGTLETVLDDFAIPEYDIMAVYPQQRNVPAKVRLFISHL 289 >gi|134094015|ref|YP_001099090.1| LysR family transcriptional regulator [Herminiimonas arsenicoxydans] Length = 305 Score = 151 bits (381), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 97/295 (32%), Positives = 149/295 (50%), Gaps = 6/295 (2%) Query: 1 MDSFNGIAVFIQAVEAGSFIRAAQRLHLSRSAVGKSIARLEERLGVRLFLRNTRSQSLTE 60 MD + +A F V+ GS AAQ L ++ +V K +A +E RL VRL R TR SLT Sbjct: 1 MDGISDLAFFALLVKRGSLAAAAQELGVTPPSVSKRLAGIEARLRVRLLNRTTRRISLTP 60 Query: 61 EGRAYYQRCLRALEELESGQALVAEGRCEPTGRVHISSPVLFGRMCVAPVLVELARRWPQ 120 EG Y R + ELE+ + ++ G G + IS+ FGR + P L AR +P+ Sbjct: 61 EGEIYLADGARLVAELEALEQRISGGNVTAKGLLKISATFGFGRRHITPQLSAFARLYPE 120 Query: 121 LDITASFTDRRVDLVEEGVDLVLRSGPLPDTSHLVARKMGVQTMMLCASPQYLADHGRPR 180 +D+ TDR V+LVE+G D +R G LPD + L ARK+ ++CASP YL +HG P Sbjct: 121 VDVQLHLTDRPVNLVEQGFDADIRFGQLPD-ARLTARKIADNRRLVCASPAYLKNHGIPL 179 Query: 181 HFSDLARHHAILYGKTT----GWPIRDEEGKVRMAPVTSRLHFDDLEAIAAATVAGAGLA 236 DL +H+ IL ++ W K V L +D E A + G G+ Sbjct: 180 TPRDLQKHNCILLRESDEIYGSWHF-SSGTKQETVKVRGSLSANDGECATAWALDGQGIV 238 Query: 237 HLPCWLISTHVKAGRLVKLMPEESFATIDMHLAWSPTRHLPLRIRTVIDALAAAL 291 W ++ ++++GRL ++ + D+++ + HL + R ++D + A Sbjct: 239 VRSEWDVAPYLRSGRLRTVLEDWQLPQADIYIVFPTKNHLSAKTRALVDFMLQAF 293 >gi|134094924|ref|YP_001099999.1| transcriptional regulator [Herminiimonas arsenicoxydans] Length = 293 Score = 122 bits (306), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 85/293 (29%), Positives = 141/293 (48%), Gaps = 11/293 (3%) Query: 5 NGIAVFIQAVEAGSFIRAAQRLHLSRSAVGKSIARLEERLGVRLFLRNTRSQSLTEEGRA 64 + + F+ +++G+ AAQ L + SAV + ++RLEE+L L R TR LT+EGR Sbjct: 6 DDLKTFVAVIDSGTLGAAAQHLGQTTSAVSRGLSRLEEKLATSLLTRTTRRMELTDEGRL 65 Query: 65 YYQRCLRALEELESGQALVAEGRCEPTGRVHISSPVLFGRMCVAPVLVELARRWPQLDIT 124 + ++ L ++ + + R +P+GR+ I + F + P + E +PQ+ + Sbjct: 66 FLKKARAILAAMDEAEEAIRVRRQQPSGRLRIDAAAPFILHAIVPHVAEFRALYPQITLE 125 Query: 125 ASFTDRRVDLVEEGVDLVLRSGPLPDTSHLVARKMGVQTMMLCASPQYLADHGRPRHFSD 184 + D+ DL+E D+ +R G L D++ L AR + + L ASP YL HG P Sbjct: 126 LTSNDQVADLLEHRTDIAIRIGNLQDST-LHARALTANPLHLLASPDYLQRHGMPTTPEQ 184 Query: 185 LARHHA---ILYGKTTGWPIRDEEGKVRMAPVTSRLHFDDLEAIAAATVAGAGLAHLPCW 241 LA H + + WPIR G+ VT L E + A + G G+A L + Sbjct: 185 LAGHQLLGFLQFESGNTWPIRHAGGE--GLTVTPALFASSGETLRALALHGQGIASLADY 242 Query: 242 LISTHVKAGRLVKLMPEESFAT---IDMHLAWSPTRHLPLRIRTVIDALAAAL 291 + + AGRLV+++ E++ T +H + L RI ++ L L Sbjct: 243 MTRDDIAAGRLVRIL--ENYYTGYRQQIHAVYYRNTQLSRRISCFLEFLQQKL 293 >gi|134094407|ref|YP_001099482.1| transcriptional regulator [Herminiimonas arsenicoxydans] Length = 304 Score = 102 bits (254), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 88/292 (30%), Positives = 145/292 (49%), Gaps = 16/292 (5%) Query: 9 VFIQAVEAGSFIRAAQRLHLSRSAVGKSIARLEERLGVRLFLRNTRSQSLTEEGRA---Y 65 +F A +A SF AA RL S A+ +++ LEE +G LF RNTR +TE G + Sbjct: 10 LFCAAADASSFKEAAARLGTSPQAITRAVKELEEAVGELLFHRNTRGIQITEFGTQLAEH 69 Query: 66 YQRCLRALEELESGQALVAEGRCEPTGRVHISSPVLFGRMCVAPVLVELARRWPQLDITA 125 + + +++L +++ E G V I++P GR + +L+ L R++P + + Sbjct: 70 AREMVTGVDKLFHHTNPLSDTNLE--GLVRITAPSPIGRRHLLKLLLPLIRQYPGIKLEL 127 Query: 126 SFTDRRVDLVEEGVDLVLRSGPLPDTSHLVARKMGVQTMMLCASPQYLADHGRPRHFSDL 185 T+ D+V++ +D+ +R GPL D S LVAR +G + + A+P+ +A G+P DL Sbjct: 128 GVTNLLADVVDKKIDIGVRIGPLRD-SRLVARSVGKVSFFVVATPELVATRGKPITPQDL 186 Query: 186 --ARHHAILYGKTT---GWPIRDEEGKVRMAPVTSRLHFDDLEAIAAATVAGAGLAHLPC 240 A++ G T W D + +P L DD E A +AG G L Sbjct: 187 LGLPTTALMDGNTGRIWPWYFADSQPLTLTSPT---LVSDDPEVECDAVLAGIGYGQLSN 243 Query: 241 WLISTHVKAGRLVKLMPEESFATIDMHLAWSPTR-HLPLRIRTVIDALAAAL 291 H+++GRLV ++ + D+++ + P R +P RIR V D + L Sbjct: 244 HQAEPHIRSGRLVTVLDDYQPVPWDLYV-YRPQRGPVPARIRLVFDRIVEIL 294 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.324 0.137 0.414 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 485,915 Number of extensions: 17512 Number of successful extensions: 92 Number of sequences better than 1.0e-08: 9 Number of HSP's gapped: 84 Number of HSP's successfully gapped: 9 Length of query: 308 Length of database: 1,000,347 Length adjustment: 81 Effective length of query: 227 Effective length of database: 733,452 Effective search space: 166493604 Effective search space used: 166493604 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 128 (53.9 bits)