BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0057.p
         (249 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094586|ref|YP_001099661.1| GMP synthase [Herminiimonas ars...    63   1e-11

>gi|134094586|ref|YP_001099661.1| GMP synthase [Herminiimonas
           arsenicoxydans]
          Length = 539

 Score = 63.2 bits (152), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 48/142 (33%), Positives = 69/142 (48%), Gaps = 19/142 (13%)

Query: 50  VIVLGGPVAVYDSDAYPWLRGEVAWLRARMLEDLPTLGICLGAQLMAAALHARVYPGSCG 109
           VI+ GGP +V + D  P +   V  L       +P LGIC G Q MA  L  +V  G+  
Sbjct: 49  VILSGGPNSVIEGDESPRVPQAVFEL------GVPVLGICYGMQAMAEQLGGKVENGTV- 101

Query: 110 KEIGWASLQPGQHLADSPWLREVVEQQTPVLHW-------HGDTFD-LPAGARHLAASAR 161
           +E G+A ++   H A    L+++ +  TP  H        HGD  + +P G + +A++  
Sbjct: 102 REFGYAEVRAHGHTA---LLKDISDFTTPEGHGMLKVWMSHGDKVNEMPPGFKLMASTPN 158

Query: 162 YPHQAFA-WGRHCLALQFHPEV 182
            P    A   RH  A QFHPEV
Sbjct: 159 CPIAGMADEARHMYAFQFHPEV 180


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.324    0.138    0.453 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 548,265
Number of extensions: 23800
Number of successful extensions: 89
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 89
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 1,000,347
Length adjustment: 79
Effective length of query: 170
Effective length of database: 740,042
Effective search space: 125807140
Effective search space used: 125807140
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 127 (53.5 bits)