BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0055.p
         (96 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094775|ref|YP_001099850.1| hypothetical protein HEAR1560 [...    60   1e-11

>gi|134094775|ref|YP_001099850.1| hypothetical protein HEAR1560
           [Herminiimonas arsenicoxydans]
          Length = 114

 Score = 60.5 bits (145), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 41/103 (39%), Positives = 55/103 (53%), Gaps = 15/103 (14%)

Query: 4   KNIAKNLFAGLLLTTAVGAAMA--------------EAPYPAETRFTSTKTRADVIAELK 49
           K+  K L A + ++ A G A A              E+ YP    F STKTRA+V AEL+
Sbjct: 2   KSTHKKLIAVIAISIASGTAFAHSANTNILQLAQAEESNYPILPSFASTKTRAEVKAELQ 61

Query: 50  QARANGELLVSDRDQEVKPVA-STKTRDEVRAELVQARANGEL 91
           QAR  G L  +D      PV  S+KTR +V+ EL Q++A+GE 
Sbjct: 62  QAREKGLLTTTDSGYPKLPVVTSSKTRAQVKTELEQSKASGEF 104


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.310    0.122    0.314 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 117,670
Number of extensions: 3231
Number of successful extensions: 16
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 15
Number of HSP's successfully gapped: 1
Length of query: 96
Length of database: 1,000,347
Length adjustment: 64
Effective length of query: 32
Effective length of database: 789,467
Effective search space: 25262944
Effective search space used: 25262944
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 121 (51.2 bits)