BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0052.p (298 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134093979|ref|YP_001099054.1| LysR family transcriptional reg... 93 2e-20 gi|134093581|ref|YP_001098656.1| LysR family transcriptional reg... 81 5e-17 gi|134094079|ref|YP_001099154.1| transcriptional regulator Cbl [... 74 1e-14 gi|134094924|ref|YP_001099999.1| transcriptional regulator [Herm... 70 1e-13 gi|134094120|ref|YP_001099195.1| putative transcriptional regula... 68 5e-13 >gi|134093979|ref|YP_001099054.1| LysR family transcriptional regulator [Herminiimonas arsenicoxydans] Length = 297 Score = 92.8 bits (229), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 68/248 (27%), Positives = 116/248 (46%), Gaps = 6/248 (2%) Query: 1 MDIRALRYFTETVRLNSFSRAADTLHVTQSTVSKMVRQLEDEVDAPLLIRDGRRLQLTDT 60 +++R LRYF F RAA LH+TQ +S+ ++ LE + L R R + LT Sbjct: 3 IELRQLRYFVTVAEEMHFGRAAIRLHMTQPPLSQAIQSLEAMLGVQLFRRTSRSVALTPA 62 Query: 61 GRVVYEQGQQILASMQRLDAEVRDTKALRCGRLEIGIPPMINI-LCTPVLKAFRERHPEI 119 G + + Q+IL L +R + GRL + + + P L+ FRE +P + Sbjct: 63 GSALLPEAQRILQQTAALPDLMRRVTSGASGRLSLAFVSTADYSVLPPFLREFRESYPGV 122 Query: 120 AIVLKEDTGPQIEQRVASGELEIGMTV--LPADPDLELQTLPVARYPMWAVAQAG-SFQK 176 I L+E T + G +++G+ + LP L+L LPV P+ A G K Sbjct: 123 EIDLREATTDVQLDDLMQGRIDVGLLIPPLPDKAKLQLDYLPVLSEPLILAAPKGLKALK 182 Query: 177 NRATLRCAQLDGMPLVLLNNEF--GLTRSLRGVFREQEITPRIVAQSAQWDWLVAMALAG 234 + ++ L +PL++ ++ +R+ +TP I ++ Q ++ + AG Sbjct: 183 GKQSVALQSLAELPLIIFPRRIAPAFHDAILSCYRDAGLTPHIGQEAIQMQTIIGLVSAG 242 Query: 235 MGAALLPE 242 MG AL+P+ Sbjct: 243 MGIALVPQ 250 >gi|134093581|ref|YP_001098656.1| LysR family transcriptional regulator [Herminiimonas arsenicoxydans] Length = 315 Score = 81.3 bits (199), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 73/293 (24%), Positives = 126/293 (43%), Gaps = 28/293 (9%) Query: 1 MDIRALRYFTETVRLNSFSRAADTLHVTQSTVSKMVRQLEDEVDAPLLIRDGRRLQLTDT 60 M + L+Y R F AA+ HV Q T+S +++LEDE+ L R G + +T Sbjct: 1 MTLTELKYIVAVAREKHFGHAAEACHVAQPTLSVAIKKLEDELGVTLFERGGSEISMTPL 60 Query: 61 GRVVYEQGQQILASMQRLDAEVRDTKALRCGRLEIGIPPMIN-ILCTPVLKAFRERHPEI 119 G + Q +++L + + K G +GI I L P++KA ER P++ Sbjct: 61 GVQIVAQAERVLEQTAAIKEIAKQNKDPLVGPFRLGIIYTIAPYLLPPLVKAMIERVPQM 120 Query: 120 AIVLKEDTGPQIEQRVASGELEIGMTVLPADPDLELQTLPVARYPMWAVAQAGSFQKNRA 179 +VL+E+ ++ +++ GE++ + LP PD L PV P R+ Sbjct: 121 PLVLQENFTVKLLEQLRQGEIDAAIVALPI-PDQGLLVQPVYDEPFVVAVPKHHPWAERS 179 Query: 180 TLRCAQLDGMPLVLLNNEFGLTRSLRGVFREQ--EITPRIVAQSAQWDWLV--------- 228 ++ L ++LL N FR+Q E+ P + S D + Sbjct: 180 SVTTDNLKSETMLLLGNGH--------CFRDQVLEVCPEMSRFSTSGDGIARTFEGSSLE 231 Query: 229 ---AMALAGMGAALLPE---PFIHRLSSDQLQAVRLVEPEVQWQVAYVTRGAY 275 M +G+G +LP+ P +H + L+ + V+P +V V R ++ Sbjct: 232 TIRHMVASGIGITVLPQASVPDMHT-TDGMLRYIPFVQPGPSRRVVLVWRKSF 283 >gi|134094079|ref|YP_001099154.1| transcriptional regulator Cbl [Herminiimonas arsenicoxydans] Length = 308 Score = 73.6 bits (179), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 70/290 (24%), Positives = 122/290 (42%), Gaps = 8/290 (2%) Query: 1 MDIRALRYFTETVRLN-SFSRAADTLHVTQSTVSKMVRQLEDEVDAPLLIRDGRRLQ-LT 58 M+ + LR ET R + + A+ L +Q VS+ +R+LE+E+ + R+G+RL LT Sbjct: 1 MNFQQLRSIRETARCGFNLTEVANVLFTSQPGVSRQIRELEEELGVDIFERNGKRLTGLT 60 Query: 59 DTGRVVYEQGQQILASMQRLDAEVRDTKALRCGRLEIGIPPMINILCTP-VLKAFRERHP 117 D GR + ++L + L ++ G L + P V++AFR P Sbjct: 61 DPGRGILTIIDRLLLEAENLQRASQEYAGQEIGTLAVATTHTQARYMLPEVVQAFRAEFP 120 Query: 118 EIAIVLKEDTGPQIEQRVASGELEIGMTVLPADPDLELQTLPVARYPMWAVAQAGSFQKN 177 ++ I L++ + I + V SG+ +IG+ +L + P R+ V G + Sbjct: 121 KVRIALQQSSPEHIAEWVLSGKADIGIATEGLSQFEDLVSFPCYRWHHAIVVPQGHALLS 180 Query: 178 RATLRCAQLDGMPLVLLNNEFGLTRSLRGVFREQEITPRIVAQSAQWDWLVAMALAGMGA 237 A + L PL+ + F + F+ +I P IV + D + G+G Sbjct: 181 HAPVTLEALAKYPLITYDLGFTGRGHIDDAFKSADIAPDIVLTAMDSDVIQQYVSLGLGV 240 Query: 238 ALLPEPFIHRLSSDQLQAV---RLVEPEVQWQVAYVTRGAYLSHAARAWM 284 ++ + S L + L V V RGAYL +++ Sbjct: 241 GIVASMAVQHNGSHGLAVIDGSHLFAQNVTRLA--VRRGAYLRQYTYSFI 288 >gi|134094924|ref|YP_001099999.1| transcriptional regulator [Herminiimonas arsenicoxydans] Length = 293 Score = 70.1 bits (170), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 78/276 (28%), Positives = 123/276 (44%), Gaps = 19/276 (6%) Query: 1 MDIRA--LRYFTETVRLNSFSRAADTLHVTQSTVSKMVRQLEDEVDAPLLIRDGRRLQLT 58 MDI + L+ F + + AA L T S VS+ + +LE+++ LL R RR++LT Sbjct: 1 MDINSDDLKTFVAVIDSGTLGAAAQHLGQTTSAVSRGLSRLEEKLATSLLTRTTRRMELT 60 Query: 59 DTGRVVYEQGQQILASMQRLDAEVRDTKALRCGRLEI-GIPPMINILCTPVLKAFRERHP 117 D GR+ ++ + ILA+M + +R + GRL I P I P + FR +P Sbjct: 61 DEGRLFLKKARAILAAMDEAEEAIRVRRQQPSGRLRIDAAAPFILHAIVPHVAEFRALYP 120 Query: 118 EIAIVL--KEDTGPQIEQRVASGELEIGMTVLPADPDLELQTLPVARYPMWAVAQAGSFQ 175 +I + L + +E R ++ I + L D L + P+ +A Q Sbjct: 121 QITLELTSNDQVADLLEHRT---DIAIRIGNL---QDSTLHARALTANPLHLLASPDYLQ 174 Query: 176 KNRATLRCAQLDGMPLV-LLNNEFGLTRSLRGVFREQ-EITPRIVAQSAQWDWLVAMALA 233 ++ QL G L+ L E G T +R E +TP + A S + L A+AL Sbjct: 175 RHGMPTTPEQLAGHQLLGFLQFESGNTWPIRHAGGEGLTVTPALFASSGE--TLRALALH 232 Query: 234 GMGAALLPEPFIHRLSSDQLQAVRLVEPEVQWQVAY 269 G G A L + ++ D + A RLV + Y Sbjct: 233 GQGIASLAD----YMTRDDIAAGRLVRILENYYTGY 264 >gi|134094120|ref|YP_001099195.1| putative transcriptional regulator [Herminiimonas arsenicoxydans] Length = 284 Score = 68.2 bits (165), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 43/145 (29%), Positives = 73/145 (50%), Gaps = 3/145 (2%) Query: 1 MDIRALRYFTETVRLNSFSRAADTLHVTQSTVSKMVRQLEDEVDAPLLIRDGRRLQLTDT 60 +D LR F V SF+RAAD++H+TQST+S+ +R+LE +V LL R GR + T Sbjct: 2 LDPVLLRSFVAVVDTGSFTRAADSVHLTQSTISQQIRRLEMQVGCDLLNRSGRYVTTTLE 61 Query: 61 GRVVYEQGQQILASMQRLDAEVRDTKALRCGRLEIGIPP-MINILCTPVLKAFRERHPEI 119 G + +I M ++ + G + +G+P + TP L AF + + + Sbjct: 62 GERLLRYAHRIAQLMDEAMEQIAQSAG--KGEVRLGVPEDFVGRALTPTLSAFIDTYSAV 119 Query: 120 AIVLKEDTGPQIEQRVASGELEIGM 144 + + ++ QR GEL++ + Sbjct: 120 RLEVSSGMSHELWQRFQRGELDLAL 144 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.322 0.135 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 526,750 Number of extensions: 20025 Number of successful extensions: 103 Number of sequences better than 1.0e-08: 12 Number of HSP's gapped: 98 Number of HSP's successfully gapped: 12 Length of query: 298 Length of database: 1,000,347 Length adjustment: 81 Effective length of query: 217 Effective length of database: 733,452 Effective search space: 159159084 Effective search space used: 159159084 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 128 (53.9 bits)