BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0048.p (578 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134096415|ref|YP_001101490.1| methyl-accepting chemotaxis pro... 344 5e-96 gi|134096243|ref|YP_001101318.1| methyl-accepting chemotaxis pro... 340 9e-95 gi|134094864|ref|YP_001099939.1| methyl-accepting chemotaxis pro... 339 2e-94 gi|134093903|ref|YP_001098978.1| methyl-accepting chemotaxis pro... 328 3e-91 gi|134093365|ref|YP_001098440.1| methyl-accepting chemotaxis pro... 323 1e-89 >gi|134096415|ref|YP_001101490.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 573 Score = 344 bits (883), Expect = 5e-96, Method: Compositional matrix adjust. Identities = 247/622 (39%), Positives = 357/622 (57%), Gaps = 93/622 (14%) Query: 1 MFGSLTVGRKLGLAFLCMVLVSLAGSALSLFNFNKLEAASAMNVHTYEVMGTA------- 53 MF ++TVG KL +FL + + + + ++N K+ A +++ E+MG + Sbjct: 1 MFKNMTVGTKLISSFLTLSVAGAIVAGIGIYNMGKIND-KAGDIYNQELMGLSYIKDANI 59 Query: 54 ---------DNMLVNMVNIE-----TGIRGYVASGNE---------------AFLAPYLE 84 N+L++ E I+ Y+AS E A A Y Sbjct: 60 DLLFIGRARGNVLLSTTEEERTLNKENIKKYLASAKENLAKAQPLFVSDSAKALFAKYAT 119 Query: 85 GRKEFRKAFDEAKKLTSDNPAQQKRLAAMLELTNKIEE-------VDQTLIKLRKEANAS 137 +++ K A L P QQ+ ELT + + +D L +L K+ Sbjct: 120 VSQDYEKEMWRALALADKEPLQQRSA----ELTTSMAQTRLHANTLDNVLTELSKQ---- 171 Query: 138 ASTQALQAYFGAAHDKVHMDRFRALQAEFNQAEESLLKVRGEQVRALSSSTLSVLIGAGA 197 RA QA V EQ+ S + + +L+ Sbjct: 172 -------------------KEVRAAQAH----------VETEQLYDSSRAFMVLLV---I 199 Query: 198 LTVLLAIVAGFAITRSIVNALGGEPAAAAQVAQHIAAGDLTVPVPLKNNDRDSLMASLAT 257 L+ I+ G ITR++ LGGEP AA VA IAAGDLTV + L++ D+ S++ ++ Sbjct: 200 LSAFSGILLGVLITRNLKGQLGGEPNYAAGVAARIAAGDLTVAIDLRSKDQTSMLFAMRE 259 Query: 258 MREQLTTIVRGIQSSGESISVAAGEIATGNTDLSQRTEQQAASLEETASSMEELTSTVRQ 317 MR+ L +IV ++S ++I+ A+G+IA GN DLS RTE+QA++LEETASSMEE+TSTV+Q Sbjct: 260 MRDSLASIVSQVRSGTDTITTASGQIAAGNLDLSSRTEEQASALEETASSMEEITSTVKQ 319 Query: 318 NSDNARQGNVLAENASTLAVKGGEVVGRVIDTMNEISDSSNRVSDIITVIEGIAFQTNIL 377 N++N++Q + LA +AS+ A++GG VV +V+DTM I++SS ++ DII VI+GIAFQTNIL Sbjct: 320 NAENSQQASTLAVHASSTAIRGGAVVSQVVDTMGSITESSRKIVDIIGVIDGIAFQTNIL 379 Query: 378 ALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKDVKDLINLSGERVQRGTHLVSEA 437 ALNAAVEAARAGEQGRGFAVVASEVRSLAQRSA+AAK++K LI S E+V G+ LV +A Sbjct: 380 ALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKQLIGDSVEKVDAGSKLVEQA 439 Query: 438 GQTINEVVQAVRNVTDIMTEISAASLEQTTGIEQVNQALGQMDQVTQQNAALVEQAAAAA 497 G T+ E+V ++ V DIM++I+AA EQ+ GIEQVNQA+ QMD+VTQQNAALVE+AAAA+ Sbjct: 440 GTTMKEIVGGIQRVADIMSDITAAGREQSAGIEQVNQAIAQMDEVTQQNAALVEEAAAAS 499 Query: 498 QAMSEQATELRSAVGIFKTAGGIAHPVPVARAAAVVKTAPKPAPAAARSLPPKVQPSVNK 557 Q++ +QAT L V +FK + + A P A + A+SL V+ ++ Sbjct: 500 QSLQDQATHLSEIVSVFK--------LDNTQIQAAHAGKPAAARSQAKSLANTVRRTMAN 551 Query: 558 PAPAPSSSFKKEEADG-DWETF 578 A + +F + ++ DW F Sbjct: 552 KAASQKIAFANQGSNSDDWSEF 573 >gi|134096243|ref|YP_001101318.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 561 Score = 340 bits (873), Expect = 9e-95, Method: Compositional matrix adjust. Identities = 215/395 (54%), Positives = 278/395 (70%), Gaps = 19/395 (4%) Query: 185 SSSTLSVLIGAGALTVLLAIVAGFAITRSIVNALGGEPAAAAQVAQHIAAGDLTVPVPLK 244 S+ L +++G ALT L IV + +TRSI L A VA+ +A+GDLT + + Sbjct: 185 SARMLLIVLGLVALT--LGIVLAWMLTRSITKPLD----YAVSVARLVASGDLTGRITVD 238 Query: 245 NNDRD-SLMASLATMREQLTTIVRGIQSSGESISVAAGEIATGNTDLSQRTEQQAASLEE 303 + D L+ +L M + LT + ++S ++I+ A+ +IA+GN DLS RTE+QA+SLEE Sbjct: 239 SKDETGQLLQALKDMNDSLTASITQVRSGVDTIATASNQIASGNLDLSSRTEEQASSLEE 298 Query: 304 TASSMEELTSTVRQNSDNARQGNVLAENASTLAVKGGEVVGRVIDTMNEISDSSNRVSDI 363 TASSMEELTSTV+QN+DNARQ N LA AS +A KGG VV +V+DTM+ I+ S+ ++ DI Sbjct: 299 TASSMEELTSTVKQNADNARQANQLAVTASGVAEKGGTVVSKVVDTMDGINTSARKIVDI 358 Query: 364 ITVIEGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKDVKDLINLS 423 I VI+GIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAK++K LI+ S Sbjct: 359 IGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKTLIDDS 418 Query: 424 GERVQRGTHLVSEAGQTINEVVQAVRNVTDIMTEISAASLEQTTGIEQVNQALGQMDQVT 483 ++V G+ LV+EAG T+ EVV +V+ VTDIM EI AAS EQ+ GIEQVNQA+GQMDQVT Sbjct: 419 VDKVDTGSKLVAEAGTTMVEVVDSVKRVTDIMAEIMAASQEQSAGIEQVNQAIGQMDQVT 478 Query: 484 QQNAALVEQAAAAAQAMSEQATELRSAVGIFKTAGGIAHPVPVARAAAVVKTAPKPAPAA 543 QQNAALVE+AAAAA++++EQA L AV IFK G+A+ VA P A Sbjct: 479 QQNAALVEEAAAAAESLNEQAANLAQAVSIFKL-DGVANSSRVA----------TRLPVA 527 Query: 544 ARSLPPKVQPSVNKPAPAPSSSFKKEEADGDWETF 578 A + P Q + + PAP ++ + + DWE F Sbjct: 528 ASNAPATRQFAAS-PAPKKIANETRPVSGDDWEEF 561 >gi|134094864|ref|YP_001099939.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 538 Score = 339 bits (870), Expect = 2e-94, Method: Compositional matrix adjust. Identities = 199/365 (54%), Positives = 263/365 (72%), Gaps = 17/365 (4%) Query: 156 MDRFRALQAE-----FNQAEESLLKVRGEQVRALSSSTLSVLIGAGALTVLLAIVAGFAI 210 +D R LQ + + A++ L +R + ++ ++GAGA+ A + GF + Sbjct: 160 IDALRKLQVDEAGLAYEAAQQRYLTIR---------NVIATVLGAGAVA---ATLLGFLL 207 Query: 211 TRSIVNALGGEPAAAAQVAQHIAAGDLTVPVPLKNNDRDSLMASLATMREQLTTIVRGIQ 270 RS+ LGGEP AAQ+ + IA GDL+ + + DR+SL+A++ M++ L V I+ Sbjct: 208 VRSVYAQLGGEPQYAAQIVRRIAGGDLSATIITRKGDRNSLLAAMQDMQQNLAKTVGDIR 267 Query: 271 SSGESISVAAGEIATGNTDLSQRTEQQAASLEETASSMEELTSTVRQNSDNARQGNVLAE 330 + ++I+ A+G+IA GN DLS RTEQQA+SLEETASSMEELT+TV+QN+ +A+Q N LA Sbjct: 268 RASDTIATASGQIAAGNIDLSARTEQQASSLEETASSMEELTATVKQNAGHAQQANQLAV 327 Query: 331 NASTLAVKGGEVVGRVIDTMNEISDSSNRVSDIITVIEGIAFQTNILALNAAVEAARAGE 390 +AS +AV+G VV +V+ TM+ IS S+ R+ DII VI GIAFQTNILALNAAVEAAR GE Sbjct: 328 SASDIAVQGNTVVAQVVTTMDSISASAGRIGDIIGVINGIAFQTNILALNAAVEAARVGE 387 Query: 391 QGRGFAVVASEVRSLAQRSAAAAKDVKDLINLSGERVQRGTHLVSEAGQTINEVVQAVRN 450 QGRGFAVVA+EVRSLAQRSA AAK++K LI+ S E+V G LV +AG T+NE+V ++ Sbjct: 388 QGRGFAVVATEVRSLAQRSAEAAKEIKSLIDDSLEKVGAGATLVDQAGSTMNEIVASIGQ 447 Query: 451 VTDIMTEISAASLEQTTGIEQVNQALGQMDQVTQQNAALVEQAAAAAQAMSEQATELRSA 510 VTDIM EI+ AS EQT GIEQVNQA+GQMD+VTQQNAALVE+AAAAA ++ EQA L Sbjct: 448 VTDIMGEITTASREQTAGIEQVNQAIGQMDRVTQQNAALVEEAAAAAGSLQEQACSLVQV 507 Query: 511 VGIFK 515 V +FK Sbjct: 508 VSVFK 512 >gi|134093903|ref|YP_001098978.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 554 Score = 328 bits (842), Expect = 3e-91, Method: Compositional matrix adjust. Identities = 202/348 (58%), Positives = 251/348 (72%), Gaps = 23/348 (6%) Query: 232 IAAGDLTVPVPLKN-NDRDSLMASLATMREQLTTIVRGIQSSGESISVAAGEIATGNTDL 290 IA+GDLT + +K+ N+ +LM L M+++LT V ++ +IS A EIA GN DL Sbjct: 229 IASGDLTSNIEVKSRNEMGTLMLGLQKMQKRLTDTVAQVREGSMAISTATTEIAAGNLDL 288 Query: 291 SQRTEQQAASLEETASSMEELTSTVRQNSDNARQGNVLAENASTLAVKGGEVVGRVIDTM 350 S RTEQQAASLEETASSMEELTSTV+QN+DNARQ N LA +AS +AVKGG VV V++TM Sbjct: 289 SSRTEQQAASLEETASSMEELTSTVKQNTDNARQANQLATSASAVAVKGGAVVSDVVNTM 348 Query: 351 NEISDSSNRVSDIITVIEGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSA 410 + I+ S+ ++ DII VI+GIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSA Sbjct: 349 DAINTSARKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSA 408 Query: 411 AAAKDVKDLINLSGERVQRGTHLVSEAGQTINEVVQAVRNVTDIMTEISAASLEQTTGIE 470 AAAK++K LI+ S +V GT LV+EAG T+ EVV +V+ VTDIM+EI AAS EQ+ GIE Sbjct: 409 AAAKEIKHLIDDSVNKVDAGTRLVAEAGTTMTEVVDSVKRVTDIMSEILAASQEQSAGIE 468 Query: 471 QVNQALGQMDQVTQQNAALVEQAAAAAQAMSEQATELRSAVGIFKTAGGIAHPVPVARAA 530 QVN A+ QMD+VTQQNAALVEQAAAAA ++ +QAT L + V +FK G H Sbjct: 469 QVNTAIVQMDEVTQQNAALVEQAAAAASSLRDQATNLSTVVSVFKLQG---H-------- 517 Query: 531 AVVKTAPKPAPAAARSLPPKVQPSVNKPAPAPSSSFKKEEADGDWETF 578 ++AP+ +L P+ +P + PA + K DGDWE F Sbjct: 518 ---QSAPQ-------NLVPQARPKALESRPAAIAHTGKGN-DGDWEQF 554 >gi|134093365|ref|YP_001098440.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 572 Score = 323 bits (829), Expect = 1e-89, Method: Compositional matrix adjust. Identities = 210/390 (53%), Positives = 265/390 (67%), Gaps = 13/390 (3%) Query: 193 IGAGALTVLLAIVAGFAITRSIVNALGGEPAAAAQVAQHIAAGDLTVPVPLKN-NDRDSL 251 IGA VLLA F + R I L A Q+A+ +AAGDLT + + + N+ L Sbjct: 192 IGAIIFGVLLAGFMAFWLIRLIARPLHD----AVQIARSVAAGDLTQQIHVNSTNETGQL 247 Query: 252 MASLATMREQLTTIVRGIQSSGESISVAAGEIATGNTDLSQRTEQQAASLEETASSMEEL 311 + +L M + L+ V ++ E+I+VA+GEIA+GN DLS RTE QA SLEETASSMEEL Sbjct: 248 LQALKDMNDSLSKTVSAVRRGTETITVASGEIASGNADLSSRTEAQAGSLEETASSMEEL 307 Query: 312 TSTVRQNSDNARQGNVLAENASTLAVKGGEVVGRVIDTMNEISDSSNRVSDIITVIEGIA 371 TSTVRQN+DNARQ N L +A+ +AVKGG VV V+ TM I DSS ++ DII VI+ IA Sbjct: 308 TSTVRQNADNARQANQLVVSATEVAVKGGSVVSEVVITMGSIKDSSRKIVDIIGVIDSIA 367 Query: 372 FQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKDVKDLINLSGERVQRGT 431 FQTNILALNAAVEAARAGEQGRGFAVVASEVR+LAQRSA AAK++K LI+ S +V G+ Sbjct: 368 FQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSAGAAKEIKALIDDSVHKVDAGS 427 Query: 432 HLVSEAGQTINEVVQAVRNVTDIMTEISAASLEQTTGIEQVNQALGQMDQVTQQNAALVE 491 LV +AG T+ E+V +V++V DIM+EI++AS EQ+ GIEQVNQA+ QMD++TQQNAALVE Sbjct: 428 KLVDQAGSTMQEIVTSVKHVADIMSEITSASQEQSDGIEQVNQAISQMDEMTQQNAALVE 487 Query: 492 QAAAAAQAMSEQATELRSAVGIFK-TAGGIAHPVPVA--RAAAVVKTAPKPAPAAARSLP 548 QAAAAAQ+M +QA EL AV IFK AGG A + RAA ++ A + A + Sbjct: 488 QAAAAAQSMQDQAVELSGAVAIFKLDAGGSAMSTSASTRRAAPALQAANPATTSRALTAA 547 Query: 549 PKVQPSVNKPAPAPSSSFKKEEADGDWETF 578 P Q P +++ DWE F Sbjct: 548 PHKQLETK-----PQKPISADKSGDDWEEF 572 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.312 0.125 0.325 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 760,630 Number of extensions: 24013 Number of successful extensions: 208 Number of sequences better than 1.0e-08: 16 Number of HSP's gapped: 155 Number of HSP's successfully gapped: 16 Length of query: 578 Length of database: 1,000,347 Length adjustment: 87 Effective length of query: 491 Effective length of database: 713,682 Effective search space: 350417862 Effective search space used: 350417862 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 131 (55.1 bits)