BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0043.p (534 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134096243|ref|YP_001101318.1| methyl-accepting chemotaxis pro... 437 e-124 gi|134095756|ref|YP_001100831.1| methyl-accepting chemotaxis pro... 417 e-118 gi|134093903|ref|YP_001098978.1| methyl-accepting chemotaxis pro... 397 e-112 gi|134094299|ref|YP_001099374.1| methyl-accepting chemotaxis pro... 397 e-112 gi|134096415|ref|YP_001101490.1| methyl-accepting chemotaxis pro... 380 e-107 >gi|134096243|ref|YP_001101318.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 561 Score = 437 bits (1125), Expect = e-124, Method: Compositional matrix adjust. Identities = 278/519 (53%), Positives = 358/519 (68%), Gaps = 10/519 (1%) Query: 1 MQLSNVTIRVRLWLGFGLLMVLMLAMAASGIARL---GQLNTQMKD-VIHDKYPKTVVAG 56 MQ N+ I VRL + FGLL+VLM M G+ RL + M++ I ++ + + G Sbjct: 1 MQFKNLKIGVRLGMAFGLLLVLMAFMTVMGVLRLQDVAKATVLMEEATIKERLAQQWIKG 60 Query: 57 DIVDQLNLIARSVRNILLLKKDAQIKSEYDRITGADKAVRDDLAQLDQLLTDADSRASLD 116 + + AR VR ++D ++ E I+ A +D +L+ L+ A+ + L Sbjct: 61 IETNTVRTFAR-VRT-SDPEQDKILQQEMSAISAAVSKQQD---ELETLVVSAEGKKLLA 115 Query: 117 KLRSALAAYMDKRDKVLNMMQQGGKEGAIDVLIDEVRPVQSATMNAADALIKLQQDMMKT 176 + A Y RD V+N+ + G E + + ++++P A + + +A++ Q + + Sbjct: 116 TVAEKRATYTAIRDDVMNLREARGAE-LQNAIANKMKPAADAYIQSVEAVVNAQINNFED 174 Query: 177 AGDEVENNYVQARTLLLVLTALGLAAAATIALMITRSITAPLDRAVRVAETVAAGDLTST 236 A V+ Y AR LL+VL + L +A M+TRSIT PLD AV VA VA+GDLT Sbjct: 175 AKGRVDTIYQSARMLLIVLGLVALTLGIVLAWMLTRSITKPLDYAVSVARLVASGDLTGR 234 Query: 237 IDDSGRDETSMLLRALKKMNDRLLDIVSQVRVSTDTIATASSEIARGNLDLSSRTEEQAA 296 I +DET LL+ALK MND L ++QVR DTIATAS++IA GNLDLSSRTEEQA+ Sbjct: 235 ITVDSKDETGQLLQALKDMNDSLTASITQVRSGVDTIATASNQIASGNLDLSSRTEEQAS 294 Query: 297 SLEETASSMEQLTATVKQNASHAGQANQLAGSASDIARQGGEVVSQVVQTMGAIDASSKK 356 SLEETASSME+LT+TVKQNA +A QANQLA +AS +A +GG VVS+VV TM I+ S++K Sbjct: 295 SLEETASSMEELTSTVKQNADNARQANQLAVTASGVAEKGGTVVSKVVDTMDGINTSARK 354 Query: 357 IVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAAEVRALAQRSATAAQEIKSL 416 IVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVR+LAQRSA AA+EIK+L Sbjct: 355 IVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKTL 414 Query: 417 IGDSVARVSDGSKLVEQAGLTIQEVVQSVQRVGAVVNEISAAGQEQSAGIEQVNLAIVQM 476 I DSV +V GSKLV +AG T+ EVV SV+RV ++ EI AA QEQSAGIEQVN AI QM Sbjct: 415 IDDSVDKVDTGSKLVAEAGTTMVEVVDSVKRVTDIMAEIMAASQEQSAGIEQVNQAIGQM 474 Query: 477 DQVTQQNAALVEQAAAAAQSLQDQAAQLARLVSVFKLEG 515 DQVTQQNAALVE+AAAAA+SL +QAA LA+ VS+FKL+G Sbjct: 475 DQVTQQNAALVEEAAAAAESLNEQAANLAQAVSIFKLDG 513 >gi|134095756|ref|YP_001100831.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 565 Score = 417 bits (1071), Expect = e-118, Method: Compositional matrix adjust. Identities = 269/523 (51%), Positives = 357/523 (68%), Gaps = 14/523 (2%) Query: 1 MQLSNVTIRVRLWLGFGLLMVLMLAMAASGIARL---GQLNTQMKDVI-HDKYPKTVVAG 56 M+++N+ I VRL L F ++++LM +M G+ RL Q +M++ ++ AG Sbjct: 1 MKITNLKIGVRLGLAFAVVLLLMASMMVIGVWRLQEVAQATVRMEEAAEQERLSIQWHAG 60 Query: 57 DIVDQLNLIARSVRNILLLKKDAQIKSEY-DRITGADKAVRDDLAQLDQLLTDADSRASL 115 + + + AR + + +++ ++ + +T + +L+ L+ + + + Sbjct: 61 NSANAIRTTAR------IRSTNQEVQQQFQNEMTAQSVEITKLQNKLESLIHSEEGKKLM 114 Query: 116 DKLRSALAAYMDKRDKVLNMMQQG---GKEGAIDVLIDEVRPVQSATMNAADALIKLQQD 172 + YMD R +V + G +E A ++ ++ P ++ QQ Sbjct: 115 SAVGDKRTVYMDIRKEVFKLKADGSPAAEEEAKKIIASKMDPALETYSKTVQDVVDFQQV 174 Query: 173 MMKTAGDEVENNYVQARTLLLVLTALGLAAAATIALMITRSITAPLDRAVRVAETVAAGD 232 A EV+N Y R LL L A+ LA +A +A +++RSIT PL+ AV VA TVA GD Sbjct: 175 TFLEAKTEVDNLYASGRMFLLTLGAIALALSALLAWLLSRSITRPLEYAVEVARTVAGGD 234 Query: 233 LTSTIDDSGRDETSMLLRALKKMNDRLLDIVSQVRVSTDTIATASSEIARGNLDLSSRTE 292 L + I+ + DET LL+AL+ MND L+ VS+VR +TIATAS++IA GNLDLSSRTE Sbjct: 235 LRNRIEVNSSDETGQLLQALRDMNDGLVKSVSEVRTGIETIATASNQIAAGNLDLSSRTE 294 Query: 293 EQAASLEETASSMEQLTATVKQNASHAGQANQLAGSASDIARQGGEVVSQVVQTMGAIDA 352 EQA+SLEETASSME+LT+TVKQNA +A QANQLA SAS +A +GG VVSQVV TM I++ Sbjct: 295 EQASSLEETASSMEELTSTVKQNADNARQANQLAVSASGVAEKGGVVVSQVVDTMEDINS 354 Query: 353 SSKKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAAEVRALAQRSATAAQE 412 S+KKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVR LAQRSA AA+E Sbjct: 355 SAKKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSAAAAKE 414 Query: 413 IKSLIGDSVARVSDGSKLVEQAGLTIQEVVQSVQRVGAVVNEISAAGQEQSAGIEQVNLA 472 IK+LIGDSV +V GSKLV +AG+T++EVV SV+RV +++EI AA QEQSAGIEQVN A Sbjct: 415 IKTLIGDSVDKVDIGSKLVAEAGVTMEEVVNSVKRVTDIMSEIMAASQEQSAGIEQVNQA 474 Query: 473 IVQMDQVTQQNAALVEQAAAAAQSLQDQAAQLARLVSVFKLEG 515 I QMDQVTQQNAALVE+AAAAA+SL +QA +LA VSVFKL+G Sbjct: 475 IGQMDQVTQQNAALVEEAAAAAESLNEQAGKLAEAVSVFKLDG 517 >gi|134093903|ref|YP_001098978.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 554 Score = 397 bits (1021), Expect = e-112, Method: Compositional matrix adjust. Identities = 253/535 (47%), Positives = 356/535 (66%), Gaps = 12/535 (2%) Query: 3 LSNVTIRVRLWLGFGLLMVLMLAMAASGIARLGQLNTQMKDVIHDKYPKTVVAGDIVDQL 62 L N++I+ RL L + ++++ A GI + N ++++ ++ P + ++ +L Sbjct: 2 LKNISIKFRLLLTMVFMGMMLIVGGAMGILGVQTTNNTLQNIYVNQMPSSEAIHSMMTRL 61 Query: 63 NLIARSVRNILLLKKDAQ-----IKSEYDRITGADKAVRDDLAQLDQLLTDADSRASLDK 117 L AR+ N++ ++ + +K + +++ + L+ + L + R D+ Sbjct: 62 -LQARAGLNLVAMRPHEEGSERILKRAENFYLQSEEEWKKYLSLPIETL---EERKVADE 117 Query: 118 LRSALAAYMDKRDK-VLNMMQQGGKEGAIDVLIDEVRPVQSATMNAADALIKLQQDMMKT 176 + + Y+ + ++ ++ ++ G E D+L++++ P+ + + D L++LQ T Sbjct: 118 VTAKRIRYLKEAEQGLIAALRAGRNEEVEDILVNKMPPLFQSLTKSTDELVELQMKSAAT 177 Query: 177 AGDEVENNYVQARTLLLVLTALGLAAAATIALMITRSITAPLDRAVRVAETVAAGDLTST 236 + + + R + +V LGL A A + R+IT PL + +T+A+GDLTS Sbjct: 178 GYQDSQTLFHYFRIIAVVGVLLGLIGVAIYAFFLIRAITGPLKEMLLHFDTIASGDLTSN 237 Query: 237 IDDSGRDETSMLLRALKKMNDRLLDIVSQVRVSTDTIATASSEIARGNLDLSSRTEEQAA 296 I+ R+E L+ L+KM RL D V+QVR + I+TA++EIA GNLDLSSRTE+QAA Sbjct: 238 IEVKSRNEMGTLMLGLQKMQKRLTDTVAQVREGSMAISTATTEIAAGNLDLSSRTEQQAA 297 Query: 297 SLEETASSMEQLTATVKQNASHAGQANQLAGSASDIARQGGEVVSQVVQTMGAIDASSKK 356 SLEETASSME+LT+TVKQN +A QANQLA SAS +A +GG VVS VV TM AI+ S++K Sbjct: 298 SLEETASSMEELTSTVKQNTDNARQANQLATSASAVAVKGGAVVSDVVNTMDAINTSARK 357 Query: 357 IVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAAEVRALAQRSATAAQEIKSL 416 IVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVR+LAQRSA AA+EIK L Sbjct: 358 IVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKHL 417 Query: 417 IGDSVARVSDGSKLVEQAGLTIQEVVQSVQRVGAVVNEISAAGQEQSAGIEQVNLAIVQM 476 I DSV +V G++LV +AG T+ EVV SV+RV +++EI AA QEQSAGIEQVN AIVQM Sbjct: 418 IDDSVNKVDAGTRLVAEAGTTMTEVVDSVKRVTDIMSEILAASQEQSAGIEQVNTAIVQM 477 Query: 477 DQVTQQNAALVEQAAAAAQSLQDQAAQLARLVSVFKLEGRE--PELAVITAPMKA 529 D+VTQQNAALVEQAAAAA SL+DQA L+ +VSVFKL+G + P+ V A KA Sbjct: 478 DEVTQQNAALVEQAAAAASSLRDQATNLSTVVSVFKLQGHQSAPQNLVPQARPKA 532 >gi|134094299|ref|YP_001099374.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 575 Score = 397 bits (1020), Expect = e-112, Method: Compositional matrix adjust. Identities = 265/522 (50%), Positives = 355/522 (68%), Gaps = 17/522 (3%) Query: 1 MQLSNVTIRVRLWLGFGLLMVLMLAMAASGIARLGQLNTQMKDVIHDKYPKTVVAGDIVD 60 M+++N+ I RL LGFGL+++L+ AM A+GI RL +N + ++ D A + + Sbjct: 1 MRIANMKIGTRLGLGFGLILLLVAAMGATGIMRLENINGASRHLVDDSLSMQKSAQNWL- 59 Query: 61 QLNLIARSVRNILLLKKDAQIKSEYDRITGADKAVRDDLAQLDQLLTDADSRASLDKLRS 120 L + R + L+K E+ + KA+ Q+ ++ + R + DK + Sbjct: 60 -LGTSVNASRTLALVKASDPESQEFFQ-----KAITAQSKQITEIQKSIEDRINSDKEKE 113 Query: 121 ALA-------AYMDKRDKVLNMMQQGGKEGAIDVLID-EVRPVQSATMNAADALIKLQQD 172 A AY+D R +L + + GG + +ID ++ P A +++ ++ ++ Sbjct: 114 LFAEVAKKRSAYIDIRKSILGV-KAGGNIAEANQMIDTKMVPALDAYVDSVKNVLGHYEN 172 Query: 173 MMKTAGDEVENNYVQARTLLLVLTALGLAAAATIALMITRSITAPLDRAVRVAETVAAGD 232 +K A + + ++Y+ R L++ + + IA +T IT PL A++VAE+VA GD Sbjct: 173 EVKLADESITDDYLSGRMALIIGAVIAILLGTLIAWRLTVGITRPLHEALKVAESVAEGD 232 Query: 233 LTSTID-DSGRDETSMLLRALKKMNDRLLDIVSQVRVSTDTIATASSEIARGNLDLSSRT 291 LT+ D +DE +LL AL +M L+ V+Q+R+ TDTIATASSEIA GNLDLSSRT Sbjct: 233 LTARSDMAETQDEPGLLLSALGRMQANLVRTVTQIRLGTDTIATASSEIASGNLDLSSRT 292 Query: 292 EEQAASLEETASSMEQLTATVKQNASHAGQANQLAGSASDIARQGGEVVSQVVQTMGAID 351 E+QA+SLEETASSME+LT+TVKQNA ++ QANQLA +AS +A +GG VVSQVV TMGAI+ Sbjct: 293 EQQASSLEETASSMEELTSTVKQNADNSRQANQLAVAASTVAVKGGAVVSQVVDTMGAIN 352 Query: 352 ASSKKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAAEVRALAQRSATAAQ 411 S+KKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA EVR LAQRSA AA+ Sbjct: 353 NSAKKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRNLAQRSAAAAK 412 Query: 412 EIKSLIGDSVARVSDGSKLVEQAGLTIQEVVQSVQRVGAVVNEISAAGQEQSAGIEQVNL 471 EIK+LIGDSV +V GSKLV +AG T+ E+V V+RV ++ EI+AA QEQS GIEQVN Sbjct: 413 EIKTLIGDSVEKVDAGSKLVAEAGTTMDEIVDGVKRVADIMAEITAASQEQSDGIEQVNQ 472 Query: 472 AIVQMDQVTQQNAALVEQAAAAAQSLQDQAAQLARLVSVFKL 513 A+ QMDQVTQQNAALVE+AAAAA+SLQDQA LA VSVF++ Sbjct: 473 AVSQMDQVTQQNAALVEEAAAAAESLQDQARNLAEAVSVFRV 514 >gi|134096415|ref|YP_001101490.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 573 Score = 380 bits (976), Expect = e-107, Method: Compositional matrix adjust. Identities = 254/521 (48%), Positives = 338/521 (64%), Gaps = 12/521 (2%) Query: 3 LSNVTIRVRLWLGFGLLMVLMLAMAASGIARLGQLNTQMKDVIHDKYPKTVVAGDIVDQL 62 N+T+ +L F L V +A GI +G++N + D+ + + D L Sbjct: 2 FKNMTVGTKLISSFLTLSVAGAIVAGIGIYNMGKINDKAGDIYNQELMGLSYIKDANIDL 61 Query: 63 NLIARSVRNILLLKKDAQIKSEYDRITGADKAVRDDLAQLDQLLTDADSRASLDKLRSAL 122 I R+ N+LL + + + I + +++LA+ L ++A K + Sbjct: 62 LFIGRARGNVLLSTTEEERTLNKENIKKYLASAKENLAKAQPLFVSDSAKALFAKYATVS 121 Query: 123 AAYMDKRDKVLNM-----MQQGGKEGAIDVLIDEVRPVQSATMNAADALIKLQQDMMKTA 177 Y + + L + +QQ E + + + R + N L K ++ A Sbjct: 122 QDYEKEMWRALALADKEPLQQRSAE--LTTSMAQTRLHANTLDNVLTELSKQKEVRAAQA 179 Query: 178 GDEVENNYVQARTLLLVLTALGLAAAATIALMITRSITAPL----DRAVRVAETVAAGDL 233 E E Y +R +++L L + + ++ITR++ L + A VA +AAGDL Sbjct: 180 HVETEQLYDSSRAFMVLLVILSAFSGILLGVLITRNLKGQLGGEPNYAAGVAARIAAGDL 239 Query: 234 TSTIDDSGRDETSMLLRALKKMNDRLLDIVSQVRVSTDTIATASSEIARGNLDLSSRTEE 293 T ID +D+TSML A+++M D L IVSQVR TDTI TAS +IA GNLDLSSRTEE Sbjct: 240 TVAIDLRSKDQTSMLF-AMREMRDSLASIVSQVRSGTDTITTASGQIAAGNLDLSSRTEE 298 Query: 294 QAASLEETASSMEQLTATVKQNASHAGQANQLAGSASDIARQGGEVVSQVVQTMGAIDAS 353 QA++LEETASSME++T+TVKQNA ++ QA+ LA AS A +GG VVSQVV TMG+I S Sbjct: 299 QASALEETASSMEEITSTVKQNAENSQQASTLAVHASSTAIRGGAVVSQVVDTMGSITES 358 Query: 354 SKKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAAEVRALAQRSATAAQEI 413 S+KIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVR+LAQRSA+AA+EI Sbjct: 359 SRKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEI 418 Query: 414 KSLIGDSVARVSDGSKLVEQAGLTIQEVVQSVQRVGAVVNEISAAGQEQSAGIEQVNLAI 473 K LIGDSV +V GSKLVEQAG T++E+V +QRV ++++I+AAG+EQSAGIEQVN AI Sbjct: 419 KQLIGDSVEKVDAGSKLVEQAGTTMKEIVGGIQRVADIMSDITAAGREQSAGIEQVNQAI 478 Query: 474 VQMDQVTQQNAALVEQAAAAAQSLQDQAAQLARLVSVFKLE 514 QMD+VTQQNAALVE+AAAA+QSLQDQA L+ +VSVFKL+ Sbjct: 479 AQMDEVTQQNAALVEEAAAASQSLQDQATHLSEIVSVFKLD 519 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.314 0.127 0.322 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 586,742 Number of extensions: 16233 Number of successful extensions: 173 Number of sequences better than 1.0e-08: 15 Number of HSP's gapped: 136 Number of HSP's successfully gapped: 15 Length of query: 534 Length of database: 1,000,347 Length adjustment: 86 Effective length of query: 448 Effective length of database: 716,977 Effective search space: 321205696 Effective search space used: 321205696 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 131 (55.1 bits)