BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0035.p (462 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134093857|ref|YP_001098932.1| putative two-component system s... 286 2e-78 gi|134094769|ref|YP_001099844.1| sensor kinase CopS like [Hermin... 234 1e-62 gi|134093798|ref|YP_001098873.1| sensory histidine kinase in two... 222 2e-59 gi|134095799|ref|YP_001100874.1| putative two-component sensor k... 112 3e-26 gi|134095288|ref|YP_001100363.1| sensory histidine kinase in two... 111 7e-26 >gi|134093857|ref|YP_001098932.1| putative two-component system sensory histidine kinase [Herminiimonas arsenicoxydans] Length = 467 Score = 286 bits (731), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 170/464 (36%), Positives = 268/464 (57%), Gaps = 14/464 (3%) Query: 1 MSLRLVVLFGLLALALFTAVGSYLSHSLHVQLERRDDEELAGKCRSINHLVEHAASLEDI 60 ++ R+ ++F + + T++G YL S ++ERRDD +L GK R + L+E+ + I Sbjct: 10 LTSRVTIVFVAIVIIASTSLGIYLYRSFVKEIERRDDTQLLGKLRQVQQLIENPDTPNII 69 Query: 61 LARRHLMLDTLSGHDQMLVRIARADGSTLM------ESHDPARSAPDLDLSAIN-VRSWD 113 + R DT+SG + LVRI DG +L+ E+ ++ + +N + +W Sbjct: 70 IERPQYFRDTMSGQENALVRIIGQDGISLLDINPQQENISYPQTTEIMQFPGVNAIANWT 129 Query: 114 RIEALRVGELRARYIASMPATRSGEKTI-VLVVRTASDRMLLLADYRADVWWAAGIGTLL 172 + R +A M S ++ + + V R ++R + ++YR + + + L Sbjct: 130 SRDGYP-----GRVVAGMAKLGSTKQPVTIYVARAYAERTDMFSEYRRKIAVSVMLSAAL 184 Query: 173 ATLLSYFLVRSGLSPLRMMAAQTRAISAHKLDTRLDLQAAPRELHEIVQSFNEMLDRLHR 232 A L++ ++R GL PLR MA + KL +LD Q AP EL ++ +FN ML RL Sbjct: 185 AALMASVMLRRGLKPLRKMARHAALVRPGKLQHQLDDQGAPSELLPLIHAFNAMLGRLQE 244 Query: 233 SFQQLSQFSADLAHDVRTPLNNLMVQTQVALGKPRGIDEYQALLSSNIEEYERLSRMMES 292 + +LSQFS DLAH+ RTP+ +L+ Q+QVALG+PR DEY+ L+ SN+EE ERLSRM++S Sbjct: 245 GYLRLSQFSTDLAHEFRTPVTSLLGQSQVALGRPRSADEYKQLVISNMEELERLSRMIDS 304 Query: 293 MLFLARADNAHVVLQLQELDVAEELSRIAEYFEGIAEEAQVRIAVSGAGRLRADTMLLRR 352 MLFLAR + + + L V +E R+ +FE +++E + ++ G G + AD LLRR Sbjct: 305 MLFLARVEREQMSVARYPLLVQDEFDRLCNFFEDMSDERGLILSNQGDGIVMADAQLLRR 364 Query: 353 AVGNLVANAIRYTPADGVITLQASLTEGATIIEVANPGPGIPPDQVERIFDRFYRADPSR 412 A+ NL++NAIR+ I L++ ++ V N G I P+ + +FDRFYRAD +R Sbjct: 365 ALSNLLSNAIRHADKGSTIELRSRQEAEFVVLSVTNTGATIGPEHMPHLFDRFYRADSAR 424 Query: 413 SSAGGSSGLGLAIVRTIMALHGGQASVHSEPGRQTVFVLRFPTA 456 + + S+GLGL+IVR IM LH G+A+V S+ + T L FPT+ Sbjct: 425 TDSSESTGLGLSIVRAIMTLHHGRATVTSQ-DKITHLELYFPTS 467 >gi|134094769|ref|YP_001099844.1| sensor kinase CopS like [Herminiimonas arsenicoxydans] Length = 458 Score = 234 bits (596), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 120/322 (37%), Positives = 191/322 (59%), Gaps = 2/322 (0%) Query: 136 SGEKTIVLVVRTASDRMLLLADYRADVWWAAGIGTLLATLLSYFLVRSGLSPLRMMAAQT 195 +G IV++ + ++ +R + + + +L ++ R GLSPLR MAA+ Sbjct: 135 AGSPVIVVIAVDKAIHTHFMSMFRTTLMLYVMVAAIATVMLGWWAARQGLSPLRTMAARA 194 Query: 196 RAISAHKLDTRLDLQAAPRELHEIVQSFNEMLDRLHRSFQQLSQFSADLAHDVRTPLNNL 255 + +++ ++ R+ + A P E+ ++ N MLDRL +L++FSADLAH++RTP++N+ Sbjct: 195 QTVTSQNMNERMPVDAVPTEMTDLAVKLNAMLDRLQNDIARLTEFSADLAHELRTPISNM 254 Query: 256 MVQTQVALGKPRGIDEYQALLSSNIEEYERLSRMMESMLFLARADNAHVVLQLQELDVAE 315 + QT V L + R +Y+ LSSN EE +RL + MLFLA+ +N + + +L++A Sbjct: 255 LTQTHVVLNQSRSTADYRDSLSSNAEELQRLGNTISDMLFLAQTENGLALPSVAKLNMAR 314 Query: 316 ELSRIAEYFEGIAEEAQVRIAVSGAGRLRADTMLLRRAVGNLVANAIRYTPADGVITLQA 375 E + E++E +AEE +V + G + D ++ RRA+ NL++NAIRYTP+ G I+++ Sbjct: 315 ECQALLEFYEALAEEKKVVLRCEGDAVVIGDQLMFRRALNNLLSNAIRYTPSYGTISIKI 374 Query: 376 SLTEGATIIEVANPGPGIPPDQVERIFDRFYRADPSR-SSAGGSSGLGLAIVRTIMALHG 434 + E T I V N G IP + +FDRF+RAD SR S S+GLGL+I R IM HG Sbjct: 375 TSAESGTTITVQNDGEEIPAEIQPHLFDRFFRADKSRKKSESDSAGLGLSITRAIMQAHG 434 Query: 435 GQASVHSEPGRQTVFVLRFPTA 456 G SV S + T F L FP++ Sbjct: 435 GSVSVVSRDSK-TAFSLYFPSS 455 >gi|134093798|ref|YP_001098873.1| sensory histidine kinase in two-component regulatory system with CusR, regulation of copper resistance, senses copper ions [Herminiimonas arsenicoxydans] Length = 482 Score = 222 bits (566), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 120/299 (40%), Positives = 186/299 (62%), Gaps = 3/299 (1%) Query: 158 YRADVWWAAGIGTLLATLLSYFLVRSGLSPLRMMAAQTRAISAHKLDTRLDLQAAPRELH 217 ++ +WWA I L+A ++++F V+ G P+R ++ + RAI + +LD RL P EL Sbjct: 174 FKRILWWATLIVALIALVVAWFAVQWGHRPIRKVSREIRAIRSSQLDVRLSPTDVPIELA 233 Query: 218 EIVQSFNEMLDRLHRSFQQLSQFSADLAHDVRTPLNNLMVQTQVALGKPRGIDEYQALLS 277 E+ SFN+ML R+ F +L+ FSAD+AH++RTP+ NL QTQVAL + R DEY+ +L Sbjct: 234 ELAVSFNDMLGRIEDGFAKLANFSADIAHELRTPVTNLSTQTQVALSQVRSADEYREVLY 293 Query: 278 SNIEEYERLSRMMESMLFLARADNAHVVLQLQELDVAEELSRIAEYFEGIAEEAQVRIAV 337 SN+EE++RLS M+ MLFLA+ +N L+L D+ + + +YFE +AE+A + + + Sbjct: 294 SNLEEFDRLSLMIGDMLFLAQTENDPRNLRLTNTDITGLVQGLFDYFEVLAEDANITLTL 353 Query: 338 SGAGR-LRADTMLLRRAVGNLVANAIRYTPADGVITLQASLTEGATIIEVANPGPGIPPD 396 SG + + AD ++ RA+ NL++NAIRY+ + ++ T I V NPG I D Sbjct: 354 SGQVKPIIADRDMMLRALSNLLSNAIRYSLPGSSVIVRLHQDAKRTTICVENPGEQIAED 413 Query: 397 QVERIFDRFYRADPSRSSAGGSSGLGLAIVRTIMALHGGQASVHSEPGRQTVFVLRFPT 455 + ++FDRF+R DPSR G +GLGLAIV++I+ H G+ S G F++ P+ Sbjct: 414 DLPKLFDRFFRVDPSRQRKSG-AGLGLAIVKSIIEAHDGKVQATSRNG-LIKFLIELPS 470 >gi|134095799|ref|YP_001100874.1| putative two-component sensor kinase transcriptional regulatory protein [Herminiimonas arsenicoxydans] Length = 512 Score = 112 bits (280), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 89/283 (31%), Positives = 142/283 (50%), Gaps = 15/283 (5%) Query: 172 LATLLSYFLVRSGLSPLRMMAAQTRAISAHKLDTRLDLQAAPRELHEIVQSFNEMLDRLH 231 +A +L +F + GL PL + + RA L + +D P E+ +V S N+ML+RL Sbjct: 211 IALILVWFALTRGLRPLAELQQRIRARRPDDL-SPIDSGHVPEEIIPLVGSLNDMLERLS 269 Query: 232 RSFQQLSQFSADLAHDVRTPLNNLMVQTQVALGKPRGID--EYQALLSSNIEEYERLSRM 289 +S + +F AD AH ++TPL + +Q+++AL R D E L + + +RM Sbjct: 270 QSIKVQKRFIADAAHQMKTPLAGMRMQSELAL---RQTDHAEIHKSLEQLAKSSKSATRM 326 Query: 290 MESMLFLARADNAHVVLQ-LQELDVAEELSRIAEYFEGIAEEAQVRIAVSG---AGRLRA 345 + +L LARA+N + +Q L+++E + + + ++ + A R Sbjct: 327 VNQLLALARAENQTPQTKPMQVLELSELARDTVQNWVQTSFNRKIDLGFEQPDEAVMARG 386 Query: 346 DTMLLRRAVGNLVANAIRYTPADGVITLQASLTE--GATIIEVANPGPGIPPDQVERIFD 403 D +L + NL+ NA+ YTPA G T++ + G +EV + GPGI P + IF+ Sbjct: 387 DATMLHELLNNLIDNALSYTPAGGNATVRVRTDQQAGLAFLEVEDNGPGIAPHERSHIFE 446 Query: 404 RFYRADPSRSSAGGSSGLGLAIVRTIMALHGGQASVHSEPGRQ 446 RFYR S SGLGLAIVR I H + + + P Q Sbjct: 447 RFYRI---LGSNVEGSGLGLAIVREIALQHNAEIEILNNPRCQ 486 >gi|134095288|ref|YP_001100363.1| sensory histidine kinase in two-component regulatory system with QseB, regulates flagella and motility by quorum sensing [Herminiimonas arsenicoxydans] Length = 430 Score = 111 bits (278), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 93/301 (30%), Positives = 149/301 (49%), Gaps = 21/301 (6%) Query: 175 LLSYFLVRSGLSPLRMMAAQTRAISAHKLDTRLDLQAAPRELHEIVQSFNEMLDRLHRSF 234 L + +V L PL +A S++ L+ L + P EL ++ + N++L RL ++ Sbjct: 120 LFIWIVVGRSLYPLHHLARAIGRRSSNALEP-LPGERYPPELQPMLAALNDLLTRLDQTL 178 Query: 235 QQLSQFSADLAHDVRTPLNNLMVQTQVALGKPRGIDEYQALLSSNIEEYERLSR---MME 291 F AD AH++RTPL L +Q Q+ R D+ Q + +ERL+R +++ Sbjct: 179 VTQRAFVADAAHELRTPLTALKLQLQLV---ERENDDRQRATGFR-KLHERLNRATHLVQ 234 Query: 292 SMLFLARADNAHVVLQLQELDVAEELSRIAEYFEGIAEEAQVRIAV-------SGAGRLR 344 +L LAR + Q++D+ + +R+ + AE V + + S A + Sbjct: 235 QLLTLARHEYRIADRSSQKIDLRQLTARVVSDYAPQAEHKGVDLGIAINDDQGSDAAMIT 294 Query: 345 ADTMLLRRAVGNLVANAIRYTPADGVI--TLQASLTEGATIIEVANPGPGIPPDQVERIF 402 + LR +GNLV NA+RYTP+ G + T+ S + ++ V + GPGIP ER+F Sbjct: 295 GNQDSLRILLGNLVDNAVRYTPSHGRVDVTVNTSTADHTVLLRVKDNGPGIPVQDQERVF 354 Query: 403 DRFYRADPSRSSAGGSSGLGLAIVRTIMALHGGQASVHSEPGRQTVFV-LRFPTAQASLS 461 DRFYR D + S SGLGL I +TI H + + + + V +RFP S + Sbjct: 355 DRFYRRDGTGESG---SGLGLFIAKTIATQHEATIELSTADSKGGLIVTVRFPLLCTSQT 411 Query: 462 G 462 G Sbjct: 412 G 412 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.321 0.134 0.373 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 732,578 Number of extensions: 27091 Number of successful extensions: 173 Number of sequences better than 1.0e-08: 24 Number of HSP's gapped: 144 Number of HSP's successfully gapped: 24 Length of query: 462 Length of database: 1,000,347 Length adjustment: 85 Effective length of query: 377 Effective length of database: 720,272 Effective search space: 271542544 Effective search space used: 271542544 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 130 (54.7 bits)