BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0034.p (223 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134093856|ref|YP_001098931.1| two-component system response r... 277 3e-76 gi|134094768|ref|YP_001099843.1| response regulator in two-compo... 271 1e-74 gi|134093799|ref|YP_001098874.1| response regulator in two-compo... 245 1e-66 gi|134095798|ref|YP_001100873.1| OmpR family response regulator ... 161 3e-41 gi|134095857|ref|YP_001100932.1| two-component regulatory system... 146 1e-36 >gi|134093856|ref|YP_001098931.1| two-component system response regulator [Herminiimonas arsenicoxydans] Length = 231 Score = 277 bits (709), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 143/225 (63%), Positives = 171/225 (76%), Gaps = 3/225 (1%) Query: 1 MHILLVEDEPKSGDYLRRGLTEAGFVVDWVQTGVDGLHNARTLDYKLIILDVMLPGMNGW 60 M IL++EDEPK GDYL RGL E+GF V + G DGL A LI+LD+MLP ++GW Sbjct: 1 MRILVIEDEPKIGDYLVRGLAESGFTVCLARNGRDGLFMATHEAVDLIVLDMMLPLLSGW 60 Query: 61 DILRELRRTHDT---PVLFLTARDEVEDRVKGLELGADDYLVKPFAFTELLARVRTLLRR 117 ++L LR D PV+ LTAR EVEDRVKGLELGADDYL+KPFAF ELLAR+RTLLRR Sbjct: 61 ELLTALRSQADKQHIPVICLTARGEVEDRVKGLELGADDYLIKPFAFVELLARIRTLLRR 120 Query: 118 GPSREADVIEYDDVVVDVVRRKVSRAGQRIDLTAKEFALLHMLIRRPGEVLSRPQIASQV 177 P R+ D I D+ +DV++RKV R G+RI LTAKEF LLH+L RR EVLSR IASQV Sbjct: 121 SPVRDEDFIRIGDMEIDVMKRKVMRNGKRITLTAKEFGLLHLLARRQSEVLSRSVIASQV 180 Query: 178 WDMNFDSDTNVVDVAVRRLRAKLDEGFDQKLLHTVWGMGYVFEVR 222 WD+NF+SDTNV+D AVRRLR+K+D+ F+ KL+HT GMGYV EVR Sbjct: 181 WDINFESDTNVIDAAVRRLRSKIDDPFETKLIHTQRGMGYVCEVR 225 >gi|134094768|ref|YP_001099843.1| response regulator in two-component regulatory system with CusS, regulation of copper resistance [Herminiimonas arsenicoxydans] Length = 230 Score = 271 bits (694), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 137/222 (61%), Positives = 175/222 (78%), Gaps = 2/222 (0%) Query: 1 MHILLVEDEPKSGDYLRRGLTEAGFVVDWVQTGVDGLHNARTLDYKLIILDVMLPGMNGW 60 M +L+VEDE K+G+YL++GL EAGF VD+ G+DG H A T +Y LIILDVMLP ++GW Sbjct: 1 MKLLIVEDEVKTGEYLQQGLMEAGFAVDYANNGLDGHHLAVTGNYDLIILDVMLPDIDGW 60 Query: 61 DILRELRRT-HDTPVLFLTARDEVEDRVKGLELGADDYLVKPFAFTELLARVRTLLRRG- 118 IL+ LR ++ P LFLTARD V DRVKGLELGADDY+VKPFAF+ELLARVRTLLRRG Sbjct: 61 KILQALRNAGNNVPALFLTARDGVADRVKGLELGADDYVVKPFAFSELLARVRTLLRRGI 120 Query: 119 PSREADVIEYDDVVVDVVRRKVSRAGQRIDLTAKEFALLHMLIRRPGEVLSRPQIASQVW 178 PS D ++ D+V+D+ RR +RAG+R+ LT KEF LL L+R GEVL R IASQ+W Sbjct: 121 PSPLVDRMQVSDLVLDLARRAATRAGKRLTLTNKEFLLLEFLVRHKGEVLPRSLIASQIW 180 Query: 179 DMNFDSDTNVVDVAVRRLRAKLDEGFDQKLLHTVWGMGYVFE 220 D+NF+SDTNV+DVA+RRLR+K+D+ ++ KL+ T+ G+GYV E Sbjct: 181 DINFNSDTNVIDVAIRRLRSKMDDDYEPKLISTIRGVGYVLE 222 >gi|134093799|ref|YP_001098874.1| response regulator in two-component regulatory system with CusS, regulation of copper resistance [Herminiimonas arsenicoxydans] Length = 207 Score = 245 bits (625), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 124/202 (61%), Positives = 157/202 (77%), Gaps = 2/202 (0%) Query: 22 EAGFVVDWVQTGVDGLHNARTLDYKLIILDVMLPGMNGWDILRELRRT-HDTPVLFLTAR 80 EAGF+VD + G+DG H A Y L++LDVMLP ++GW I++ LR PVLFLTAR Sbjct: 2 EAGFMVDLARNGLDGHHMAMNEQYDLVLLDVMLPDVDGWRIVKSLREAGKQMPVLFLTAR 61 Query: 81 DEVEDRVKGLELGADDYLVKPFAFTELLARVRTLLRRGPS-READVIEYDDVVVDVVRRK 139 V+DRVKGLELGADDYL+KPFAF+ELLARVRTLLRRG + +++ +E D+++D+ RRK Sbjct: 62 GGVDDRVKGLELGADDYLIKPFAFSELLARVRTLLRRGSAPSQSERLEVADLILDLPRRK 121 Query: 140 VSRAGQRIDLTAKEFALLHMLIRRPGEVLSRPQIASQVWDMNFDSDTNVVDVAVRRLRAK 199 +R GQ+I LT KEF+LL +L RR GEVL R IASQVWDMNFDSD+N +DVA+RRLRAK Sbjct: 122 ATRMGQKIVLTNKEFSLLELLARRQGEVLPRSLIASQVWDMNFDSDSNAIDVAIRRLRAK 181 Query: 200 LDEGFDQKLLHTVWGMGYVFEV 221 +D+ F+ KL+HTV GMGY + Sbjct: 182 IDDPFEPKLIHTVRGMGYTLDT 203 >gi|134095798|ref|YP_001100873.1| OmpR family response regulator [Herminiimonas arsenicoxydans] Length = 233 Score = 161 bits (407), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 92/221 (41%), Positives = 135/221 (61%), Gaps = 3/221 (1%) Query: 1 MHILLVEDEPKSGDYLRRGLTEAGFVVDWVQTGVDGLHNARTLDYKLIILDVMLPGMNGW 60 M ILL ED+ D L R L ++G+V D V+ GV+ T D+ L+ILD+ LP M+G Sbjct: 1 MRILLAEDDSVLADGLTRSLRQSGYVTDCVKNGVEADSALSTQDFDLLILDLGLPKMSGL 60 Query: 61 DILRELR-RTHDTPVLFLTARDEVEDRVKGLELGADDYLVKPFAFTELLARVRTLLRRGP 119 ++L+ LR R PVL LTA D +E RVKGL+LGADD++ KPFA +EL ARVR L RRG Sbjct: 61 EVLQRLRARNSRLPVLILTAGDSIEQRVKGLDLGADDFMAKPFALSELEARVRALTRRGA 120 Query: 120 SREADVIEYDDVVVDVVRRKVSRAGQRIDLTAKEFALLHMLIRRPGEVLSRPQIASQVWD 179 VI++ + D V R Q ++L+A+E LL +L++R G ++S+ Q+ + + Sbjct: 121 GGGPTVIKHGPLSYDQVGRIAYINDQMLELSARELGLLEVLLQRSGRLVSKEQLVDHLCE 180 Query: 180 MNFDSDTNVVDVAVRRLRAKLDEGFDQKLLHTVWGMGYVFE 220 + + N ++V V RLR K++ G + + TV G+GY E Sbjct: 181 WSEEVSNNAIEVYVHRLRKKIEIGGLR--IATVRGLGYCLE 219 >gi|134095857|ref|YP_001100932.1| two-component regulatory system response regulator [Herminiimonas arsenicoxydans] Length = 229 Score = 146 bits (368), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 85/221 (38%), Positives = 129/221 (58%), Gaps = 3/221 (1%) Query: 1 MHILLVEDEPKSGDYLRRGLTEAGFVVDWVQTGVDGLHNARTLDYKLIILDVMLPGMNGW 60 M IL+VED+ L R LT+AG+ VD+ G D Y L++LD+ LP M+G Sbjct: 1 MRILIVEDDAVLAAALTRALTQAGYAVDYADNGEDANRALSNDAYALVLLDIALPKMDGL 60 Query: 61 DILRELR-RTHDTPVLFLTARDEVEDRVKGLELGADDYLVKPFAFTELLARVRTLLRRGP 119 +LR LR R PVL LTARD ++DRV GL+LGADDY+ KPF E ARVR L+RRG Sbjct: 61 AVLRRLRERKSRVPVLILTARDTLDDRVAGLDLGADDYMTKPFDLLEFEARVRALIRRGQ 120 Query: 120 SREADVIEYDDVVVDVVRRKVSRAGQRIDLTAKEFALLHMLIRRPGEVLSRPQIASQVWD 179 + + + D+ ++ ++L+ +E A+ +L+ R G+V+++ Q+ +++ Sbjct: 121 FDAGKSLTHGGLRFDLEAHRLFHNDVPVELSVRELAVFEVLLSRQGQVVTKEQMVDRLFG 180 Query: 180 MNFDSDTNVVDVAVRRLRAKLDEGFDQKLLHTVWGMGYVFE 220 D +N ++V V R+R KL E ++ + TV GMGY+ E Sbjct: 181 WGDDGGSNAIEVYVHRMRKKL-EPYNIT-IRTVRGMGYLLE 219 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.324 0.142 0.422 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 417,509 Number of extensions: 15970 Number of successful extensions: 137 Number of sequences better than 1.0e-08: 24 Number of HSP's gapped: 112 Number of HSP's successfully gapped: 24 Length of query: 223 Length of database: 1,000,347 Length adjustment: 78 Effective length of query: 145 Effective length of database: 743,337 Effective search space: 107783865 Effective search space used: 107783865 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.5 bits) S2: 127 (53.5 bits)