BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0032.p (735 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134093880|ref|YP_001098955.1| putative signal peptide [Hermin... 296 2e-81 gi|134094556|ref|YP_001099631.1| hypothetical protein HEAR1331 [... 270 2e-73 gi|134094165|ref|YP_001099240.1| putative sensor/regulator prote... 270 2e-73 gi|134094323|ref|YP_001099398.1| putative sensory protein [Hermi... 266 3e-72 gi|134094472|ref|YP_001099547.1| hypothetical protein HEAR1245 [... 261 1e-70 >gi|134093880|ref|YP_001098955.1| putative signal peptide [Herminiimonas arsenicoxydans] Length = 944 Score = 296 bits (759), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 176/478 (36%), Positives = 271/478 (56%), Gaps = 14/478 (2%) Query: 258 RGDGHSFPAELHCAMI--DGASPGGQIWVIIDVSERLEAENRIDRLAFYDPVTELPNKKL 315 R DG F ++L+ A + D + I V D++ E+ ++ D +T L N+ L Sbjct: 463 RKDGTLFWSDLYIAPVKDDTGTVSHFIVVQYDITATKRYESELEFQTNRDALTGLANRSL 522 Query: 316 FLDRLRRGLVRQQSQGSPIAVFYLEIHRADLSHGLVKADDADHLSKECARRLGACVSVDQ 375 DRL + + G PI + ++++ R + + D L K + RL A V Sbjct: 523 MRDRLGQAVSYAHRYGHPIWILFVDLDRFKFVNDTLGHQAGDILLKAVSARLQAAVRDTD 582 Query: 376 TLARLDGEHFALGCEIRSEA-LADGI--RFCEALARRLTAALAEPQGVAVSFPYSLNIGI 432 T+AR+ G+ F L R++A L+ GI R E++A+ LT E F S +IG+ Sbjct: 583 TVARMGGDEFVLILPERTDAGLSTGIMQRIMESIAQPLTIEGHE-------FFISGSIGV 635 Query: 433 NILRGQVQSAEEALMQAKLAMVQSLAAGRNAFRFFDPAMQALASQRSALEVELREAVAQG 492 + ++ EE + A +AM ++ GRN F+F+ PAM A +R +E +LR A+ + Sbjct: 636 AVYPADGETPEELIKHADIAMYRAKETGRNNFQFYTPAMNERALERLHIEGDLRNALERE 695 Query: 493 QFVVYYQPQVTY-EGQVVGAEALVRWMHPSKGMVAPAQFIAVAEQLGLMEEIGHLVLEVI 551 +F ++YQPQV GQ+VG EAL+RW HP GMV P +FI +AE+ GL+ IG V+ Sbjct: 696 EFTLHYQPQVDLRSGQIVGVEALIRWQHPELGMVPPVRFIGLAEENGLIVPIGAWVIRTA 755 Query: 552 CCDLESWQRAGLAQDLVVAVNVSAQEFKVDHFVARFHETIRHHRLHSKAVKVELTESMMI 611 C + WQ +G L ++VN+SA++F + V ++R L + +++ELTES+++ Sbjct: 756 CLQNKVWQESGFGH-LRMSVNLSARQFAQEDLVDSIAVSLREANLAPEYLEIELTESLVM 814 Query: 612 ENIDEVIEKMNDLKSHAVSISLDDFGTGYSSLSYLGRFPIDQIKIDQSFVRQIQTDAATA 671 ++D I + +LK+ V +S+DDFGTGYSSLSYL RFPID +KID+SFV I D A Sbjct: 815 ADVDRAIGILRELKALGVQLSIDDFGTGYSSLSYLKRFPIDVLKIDRSFVNDITIDPDDA 874 Query: 672 SIIRSIIMLGQSLGLSIIAEGVETQEQRDLLHAQGCTLYQGFWYGRPMPGEQFAALLQ 729 +I+ S+I L SL L +IAEGVET+EQ L C QG+++ RP+ E F+ +L+ Sbjct: 875 AIVASVISLAHSLRLDVIAEGVETEEQLTYLREHNCDQIQGYFFSRPVTAEAFSVMLK 932 >gi|134094556|ref|YP_001099631.1| hypothetical protein HEAR1331 [Herminiimonas arsenicoxydans] Length = 859 Score = 270 bits (691), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 164/450 (36%), Positives = 251/450 (55%), Gaps = 21/450 (4%) Query: 287 DVSERLEAENRIDRLAFYDPVTELPNKKLFLDRLRRGLVRQQSQGSPIAVFYLEIHRADL 346 D++ + A+ RI+ LA +D +T LPN+ L +R +R L + + +AV +L++ Sbjct: 417 DITNQKNAQARIESLAHFDVLTGLPNRALLDERAQRALRLAEEDQATLAVMFLDLDHFKN 476 Query: 347 SHGLVKADDADHLSKECARRLGACVSVDQTLARLDGEHFAL---GCEIRSEALADGIRFC 403 + + + D L E A+RL A + D TL+RL G+ F L G S Sbjct: 477 INDTLGHNLGDTLLVELAQRLRAVLRRDDTLSRLGGDEFVLLLPGANRES---------A 527 Query: 404 EALARRLTAALAEPQGVAVSFPYSLN----IGINILRGQVQSAEEALMQAKLAMVQSLAA 459 + +A+ L A+ EP + + LN IGI + E A +AM ++ Sbjct: 528 KKIAQELMRAINEPYRIG---SHELNVMASIGIAVYPADGMDFETLCKNADVAMYRAKQE 584 Query: 460 GRNAFRFFDPAMQALASQRSALEVELREAVAQGQFVVYYQPQVTY-EGQVVGAEALVRWM 518 GRNA+R F MQA +++ + LR+A+AQ Q V+YQPQ++ G V+GAEAL+RW Sbjct: 585 GRNAYRSFTQEMQAYSTRYLQVLNALRQAIAQEQLHVHYQPQISLISGDVIGAEALLRWH 644 Query: 519 HPSKGMVAPAQFIAVAEQLGLMEEIGHLVLEVICCDLESWQRAGLAQDLVVAVNVSAQEF 578 HP G ++PA+FI +AE+ GL+ +IG VL V + W + GL + L++AVN+SA +F Sbjct: 645 HPELGNISPAEFIPIAEESGLILQIGEWVLRVAVAQAKKWHQLGLDK-LIIAVNLSAVQF 703 Query: 579 KVDHFVARFHETIRHHRLHSKAVKVELTESMMIENIDEVIEKMNDLKSHAVSISLDDFGT 638 + + ++ + +++ELTE + + + I MN L V +S+DDFGT Sbjct: 704 RHAGLPNLVMQILKEEDFPPQYLELELTEGVAMHDPQGAIAMMNSLHERGVRMSIDDFGT 763 Query: 639 GYSSLSYLGRFPIDQIKIDQSFVRQIQTDAATASIIRSIIMLGQSLGLSIIAEGVETQEQ 698 GYSSLSYL +F ++KIDQSFVR I TDA +I+ +II + ++LGL IAEGVET EQ Sbjct: 764 GYSSLSYLKQFKAYKLKIDQSFVRDISTDAEDKAIVSAIIGMAKNLGLQTIAEGVETAEQ 823 Query: 699 RDLLHAQGCTLYQGFWYGRPMPGEQFAALL 728 + L +GC QG+ Y +P+P F + Sbjct: 824 QAFLREEGCHEAQGYHYSKPLPAADFETFI 853 >gi|134094165|ref|YP_001099240.1| putative sensor/regulator protein [Herminiimonas arsenicoxydans] Length = 818 Score = 270 bits (689), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 166/535 (31%), Positives = 282/535 (52%), Gaps = 12/535 (2%) Query: 202 IAFANGAAQTMLGWPTDQLEALPCAQI-FQDPLQQAVYVTNKLVREQGAAGEIVLLKRGD 260 + + NGA +T+ G+ +++ C + D Q + +REQ A ++ D Sbjct: 285 LIYVNGAFETITGYSSEEAIGRNCKFLQGMDTDQPELGKLRAAIREQRPASVLLRNYHKD 344 Query: 261 GHSFPAELHCAMID---GASPGGQIWVIIDVSERLEAENRIDRLAFYDPVTELPNKKLFL 317 G F EL+ A + G + G + V+ DV++ + ++ A YD +T L N+ L Sbjct: 345 GSMFLNELYIAPVSDTSGGAVGHFVGVLYDVTQIKRYQEDLEHQANYDTLTGLANRNLLN 404 Query: 318 DRLRRGLVRQQSQGSPIAVFYLEIHRADLSHGLVKADDADHLSKECARRLGACVSVDQTL 377 +R ++ L++ + +++ ++++ L + + D L RL CV T+ Sbjct: 405 ERTQQALLQARRHDHFLSLVFIDLDNFKLVNDSMGHGAGDELIANVGSRLQTCVRDGDTV 464 Query: 378 ARLDGEHFALGCEIRSEALADGIRFCEALARRLTAALAEPQGV-AVSFPYSLNIGINILR 436 AR+ G+ F L + +++++D + +R+ A L +P + + ++G+ Sbjct: 465 ARIGGDEFVL--LLTNQSVSDS---NAGVMQRIQAELIKPMWIRGQEIVVTCSMGVARFP 519 Query: 437 GQVQSAEEALMQAKLAMVQSLAAGRNAFRFFDPAMQALASQRSALEVELREAVAQGQFVV 496 + +E L A AM ++ ++GRN F+F+ M A + +R +LE +L A+ + + Sbjct: 520 EDGEDSESLLANADTAMYRAKSSGRNNFQFYTKEMNATSGERLSLESDLWHALKNDELFL 579 Query: 497 YYQPQVTY-EGQVVGAEALVRWMHPSKGMVAPAQFIAVAEQLGLMEEIGHLVLEVICCDL 555 YQPQ+ +G V+G EAL+RW HP +G++AP FI +AE GL+ IG VLE C Sbjct: 580 VYQPQIDLRDGTVIGMEALIRWQHPKRGLIAPMDFIPMAECNGLIIPIGIWVLETACRHN 639 Query: 556 ESWQRAGLAQDLVVAVNVSAQEFKVDHFVARFHETIRHHRLHSKAVKVELTESMMIENID 615 Q+ GL + VA+N+SA++ +FV I L +++E+TESM++ N++ Sbjct: 640 LQLQKEGLPP-IRVAINLSARQLSDRNFVESVQSVIEAIGLDPHYLELEVTESMVMHNVE 698 Query: 616 EVIEKMNDLKSHAVSISLDDFGTGYSSLSYLGRFPIDQIKIDQSFVRQIQTDAATASIIR 675 +V+ +NDL + +SLDDFGTG+SSL+YL RFPID++KIDQSF+ +D A I + Sbjct: 699 DVVVTLNDLNKMGIQLSLDDFGTGFSSLAYLKRFPIDRLKIDQSFIFNCDSDPGDAIIAQ 758 Query: 676 SIIMLGQSLGLSIIAEGVETQEQRDLLHAQGCTLYQGFWYGRPMPGEQFAALLQT 730 +II L L + +IAEGVE E L GC QG++ RP+ + L T Sbjct: 759 TIIALAHGLKIKVIAEGVEKSEHLSFLKKNGCDEGQGYFISRPLTFDDLRMFLLT 813 >gi|134094323|ref|YP_001099398.1| putative sensory protein [Herminiimonas arsenicoxydans] Length = 710 Score = 266 bits (680), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 155/444 (34%), Positives = 255/444 (57%), Gaps = 9/444 (2%) Query: 288 VSERLEAENRIDRLAFYDPVTELPNKKLFLDRLRRGLVRQQSQGSPIAVFYLEIHRADLS 347 ++ER E I A +D +T LPN+ L DR+++ ++ G+ A+ +L++ + Sbjct: 273 ITERKLHEAEIQFQATHDALTGLPNRTLLYDRMQQAVLHSARYGNLTAIAFLDLDQFKFI 332 Query: 348 HGLVKADDADHLSKECARRLGACVSVDQTLARLDGEHFALGCEIRSEALADGIRFCEALA 407 + + D L K A+RL +C+ T+AR G+ F L + S+ + I Sbjct: 333 NDSLGHQVGDELLKITAQRLTSCLRESDTVARQGGDEFVL--LLTSQPSEESITHT---M 387 Query: 408 RRLTAALAEP-QGVAVSFPYSLNIGINILRGQVQSAEEALMQAKLAMVQSLAAGRNAFRF 466 +R+ +A+P + F + ++G+ + + AE L A AM ++ GRN F++ Sbjct: 388 QRVLHEVAQPWMANGLEFRITCSVGVTLCPDDGRDAETLLKNADSAMYKAKELGRNNFQY 447 Query: 467 FDPAMQALASQRSALEVELREAVAQGQFVVYYQPQVTY-EGQVVGAEALVRWMHPSKGMV 525 F M A+ R AL LR+A+ +FV++YQP++ G ++GAEAL+RW + ++GMV Sbjct: 448 FATEMNDTATDRLALLNRLRQAIPNHEFVLHYQPKINLANGDIIGAEALIRW-NSAEGMV 506 Query: 526 APAQFIAVAEQLGLMEEIGHLVLEVICCDLESWQRAGLAQDLVVAVNVSAQEFKVDHFVA 585 +P FI +AE+ GL+ IG VLE C +WQ AG A + ++VN+S+++ V Sbjct: 507 SPGSFIPLAEETGLIIPIGVWVLETACRQNRAWQLAGYAP-ITISVNLSSRQLARGDIVE 565 Query: 586 RFHETIRHHRLHSKAVKVELTESMMIENIDEVIEKMNDLKSHAVSISLDDFGTGYSSLSY 645 + + + L ++ +++E+TES+M ++++ + L+ V ISLDDFGTGYSSLSY Sbjct: 566 QVEQVLAETGLEAQYLELEITESVMASDVEKSFALLTRLRLLGVKISLDDFGTGYSSLSY 625 Query: 646 LGRFPIDQIKIDQSFVRQIQTDAATASIIRSIIMLGQSLGLSIIAEGVETQEQRDLLHAQ 705 L RFP+D +KIDQSFVR + T +A+I+++II LG +L L+++AEG+ET+EQ L Sbjct: 626 LKRFPVDTLKIDQSFVRDLATSQDSAAIVKAIISLGHNLNLTVLAEGIETEEQFQFLLKS 685 Query: 706 GCTLYQGFWYGRPMPGEQFAALLQ 729 C QG+ RP+ + F LLQ Sbjct: 686 ACNEGQGYLMSRPVSHQHFELLLQ 709 >gi|134094472|ref|YP_001099547.1| hypothetical protein HEAR1245 [Herminiimonas arsenicoxydans] Length = 715 Score = 261 bits (666), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 154/444 (34%), Positives = 243/444 (54%), Gaps = 9/444 (2%) Query: 294 AENRIDRLAFYDPVTELPNKKLFLDRLRRGLVRQQSQGSPIAVFYLEIHRADLSHGLVKA 353 A + R A D +T+LPN+ L DRL + L + + + A+ ++++ + + Sbjct: 259 ANQELTRQALQDNLTKLPNRTLLEDRLNQILHKAERTHTRFALMFIDLDGFKAINDSLGH 318 Query: 354 DDADHLSKECARRLGACVSVDQTLARLDGEHFALGCEIRSEALADGIRFCEALARRLTAA 413 D L E A+R+ + T ARL G+ F L E+ A ++A +L Sbjct: 319 HIGDMLLIEVAQRIRGSIRAQDTAARLGGDEFVLLIEVTEPEDA------ASVADKLCNI 372 Query: 414 LAEPQGVAV-SFPYSLNIGINILRGQVQSAEEALMQAKLAMVQSLAAGRNAFRFFDPAMQ 472 + +P + + S ++GI I + + L+ A AM + + GRN + FF+ +M Sbjct: 373 INQPFEIDFHTLGVSASVGITIYPDDGHTPHDLLVNADAAMYHTKSTGRNGYHFFEASMN 432 Query: 473 ALASQRSALEVELREAVAQGQFVVYYQPQV-TYEGQVVGAEALVRWMHPSKGMVAPAQFI 531 A A + + +LR A+ + +F ++YQP+ T G VVGAEAL+RW HP++GM+AP FI Sbjct: 433 ANAHNQLQVIQDLRLALERKEFKLHYQPKFNTPNGIVVGAEALLRWQHPTRGMIAPDDFI 492 Query: 532 AVAEQLGLMEEIGHLVLEVICCDLESWQRAGLAQDLVVAVNVSAQEFKVDHFVARFHETI 591 A+AE+ GL+ IG VL+ C + W G Q VAVN+SA +F DH + T+ Sbjct: 493 ALAEKTGLIVPIGEWVLDEACRQMRIWHDEG-NQHWKVAVNLSAVQFSNDHLIELVQTTL 551 Query: 592 RHHRLHSKAVKVELTESMMIENIDEVIEKMNDLKSHAVSISLDDFGTGYSSLSYLGRFPI 651 + + + +E+TES + +++ + ++ L + IS+DDFGTGYSSL YL R P Sbjct: 552 ARNNFPASGLILEVTESTAMHDVEASLTILDKLAGLGIDISIDDFGTGYSSLLYLKRLPA 611 Query: 652 DQIKIDQSFVRQIQTDAATASIIRSIIMLGQSLGLSIIAEGVETQEQRDLLHAQGCTLYQ 711 ++KID+ F+R + + +SI+ +II LG+SL L I+AEGVET+EQ+ L GC Q Sbjct: 612 TELKIDRGFIRDLAQGSNDSSIVAAIIALGRSLNLHIVAEGVETEEQQAYLRVLGCDAMQ 671 Query: 712 GFWYGRPMPGEQFAALLQTPLPAS 735 G+ GRPM +QF + T AS Sbjct: 672 GYLMGRPMAPDQFMDAIHTAALAS 695 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.322 0.135 0.387 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 1,285,137 Number of extensions: 50570 Number of successful extensions: 225 Number of sequences better than 1.0e-08: 17 Number of HSP's gapped: 186 Number of HSP's successfully gapped: 17 Length of query: 735 Length of database: 1,000,347 Length adjustment: 89 Effective length of query: 646 Effective length of database: 707,092 Effective search space: 456781432 Effective search space used: 456781432 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 132 (55.5 bits)