BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0030.p
         (242 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093649|ref|YP_001098724.1| hypothetical protein HEAR0371 [...    92   3e-20

>gi|134093649|ref|YP_001098724.1| hypothetical protein HEAR0371
           [Herminiimonas arsenicoxydans]
          Length = 236

 Score = 91.7 bits (226), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 68/218 (31%), Positives = 107/218 (49%), Gaps = 9/218 (4%)

Query: 20  LQRPTRRVSIHVSPEGAVQVDAPEGTALPEIKQAVRKRAAWIWQQLQAVTRRRLHVLP-- 77
           L R  RR    +  +  +++ AP+   L EI+ A+ ++  WI+ +L     R    L   
Sbjct: 12  LVRSKRRSIGFMIDDDGLRITAPKWVTLTEIENAIIEKQRWIFTKLNERRERSARRLQPQ 71

Query: 78  REYVSGETHFYLGRRHMLKVLRAEGGESGVRLWRGRLEIRAVRPDALTVRKL---LEDWY 134
            E+  G T  YLG    L++L  +   +G+       E+    P     ++L   ++ W 
Sbjct: 72  MEWRDGGTLPYLGHDITLRILATQA--AGILYDPVTKELTVCLPSDAAEQQLKDRVQGWL 129

Query: 135 RQRATDVFAKVLLEMAPRLGLRRTMPPVRLLSMRTQWGSCSPKGEILLNPSLVKAPRPCI 194
           +  A  +FA+ L   A +LG+  +     L S  TQWGSC+  G+I LN  L+    P I
Sbjct: 130 QLEAKRLFAERLPVYAEKLGV--SYQSFALSSAMTQWGSCTADGKIRLNWRLIHFALPLI 187

Query: 195 EYVVAHELCHLREHNHSDRFYKHLARALPDWEARKAEL 232
           +YV+AHEL HLRE NHS +F+  +    P++ A K  L
Sbjct: 188 DYVIAHELSHLREMNHSPQFWATVQSVFPEFAAAKKAL 225


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.324    0.137    0.426 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 440,311
Number of extensions: 17354
Number of successful extensions: 57
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 56
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 1,000,347
Length adjustment: 79
Effective length of query: 163
Effective length of database: 740,042
Effective search space: 120626846
Effective search space used: 120626846
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 127 (53.5 bits)