BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0001.p
         (467 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093295|ref|YP_001098370.1| chromosomal replication initiat...   810   0.0  

>gi|134093295|ref|YP_001098370.1| chromosomal replication initiation
           protein [Herminiimonas arsenicoxydans]
          Length = 460

 Score =  810 bits (2092), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 396/467 (84%), Positives = 421/467 (90%), Gaps = 7/467 (1%)

Query: 1   MENFWQACSHKLEQELTPQQYSAWIKPLVPLDFEDGLLRIAAPNRFKLDWVKTQFANRIT 60
           MENFWQACS +LEQELTPQQYSAWIKPL PLD+EDG LRIAAPNRFKLDWVKTQFA+RIT
Sbjct: 1   MENFWQACSAQLEQELTPQQYSAWIKPLTPLDYEDGTLRIAAPNRFKLDWVKTQFASRIT 60

Query: 61  ALACEYWDAPTEVQFVLDPRGNQGRRPATANAQANGGGANGLGLPNHEQLHLDPEPAQPV 120
           ++A ++W+ P EVQFVLDPR    RRPA   AQA+        +P++    L+P P+   
Sbjct: 61  SIAAQFWEVPVEVQFVLDPRLVAARRPA---AQASVVSDRADDVPSNV---LEPIPSNAT 114

Query: 121 RAVAPRQEQSRINPVLTFDNLVTGKANQLARAAATQVANNPGTSYNPLFLYGGVGLGKTH 180
               PR++QSRIN  LTFD+ VTGKANQLARAAA QVANNPG+SYNPLFLYGGVGLGKTH
Sbjct: 115 DHT-PRRDQSRINTALTFDSFVTGKANQLARAAAIQVANNPGSSYNPLFLYGGVGLGKTH 173

Query: 181 IIHAIGNQVLVDNPGAKIRYIHAEQYVRDVVTAYQRKGFDDFKRYYHSLDLLLIDDIQFF 240
           +IHAIGNQVL DNP  KIRYIHAEQYVRDVVTAYQRKGFDDFKRYYHSLDLLLIDDIQFF
Sbjct: 174 LIHAIGNQVLADNPNVKIRYIHAEQYVRDVVTAYQRKGFDDFKRYYHSLDLLLIDDIQFF 233

Query: 241 GGKSRTQEEFFYAFEALIAAKKQIIITSDTYPKEISGMDDRLISRFDSGLTVAIEPPELE 300
           GGKSRTQEEFFYAFEALIAAKKQIIITSDTYPKEI+GMDDRLISRFDSGLTVA+EPPELE
Sbjct: 234 GGKSRTQEEFFYAFEALIAAKKQIIITSDTYPKEITGMDDRLISRFDSGLTVAVEPPELE 293

Query: 301 MRVAILMKKASAEDVVLSDDVAFFVAKHLRSNVRELEGALRKILAYSRFHGKDITIDVVK 360
           MRVAIL+KKA  E V  SDDVAFFVAKHLRSNVRELEGALRKILAYSRFHGKDITI+VVK
Sbjct: 294 MRVAILLKKAVQEGVTFSDDVAFFVAKHLRSNVRELEGALRKILAYSRFHGKDITIEVVK 353

Query: 361 EALKDLLSVQNRQISVENIQKTVADFFNIKVADMYSKKRPANIARPRQIAMYLAKELTQK 420
           +ALKDLLSVQNRQISVENIQKTVADFFNIKVADMYSKKRPANIARPRQIAMYLAKELTQK
Sbjct: 354 DALKDLLSVQNRQISVENIQKTVADFFNIKVADMYSKKRPANIARPRQIAMYLAKELTQK 413

Query: 421 SLPEIGDLFGGRDHTTVLHAVRKIAADRAKSPECNHELHVLEQTLKG 467
           SLPEIG+LFGGRDHTTVLHAVRKIAADR KSPECNHELHVLEQTLKG
Sbjct: 414 SLPEIGELFGGRDHTTVLHAVRKIAADRGKSPECNHELHVLEQTLKG 460


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.320    0.136    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 838,577
Number of extensions: 32360
Number of successful extensions: 79
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 78
Number of HSP's successfully gapped: 1
Length of query: 467
Length of database: 1,000,347
Length adjustment: 85
Effective length of query: 382
Effective length of database: 720,272
Effective search space: 275143904
Effective search space used: 275143904
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)