BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4686.p
         (255 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300314081|ref|YP_003778173.1| glutamine amidotransferase [Her...   503   e-144

>gi|300314081|ref|YP_003778173.1| glutamine amidotransferase
           [Herbaspirillum seropedicae SmR1]
          Length = 255

 Score =  503 bits (1294), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 238/255 (93%), Positives = 247/255 (96%)

Query: 1   MCQLLGMNCNTPTDIVFSFTGFATRGGLTDHHRDGWGIAFFEGSGVRTFVDHQAAVDSPV 60
           MCQLLGMNCNTPTDIVFSFTGFATRGGLTDHHRDGWGIAFFEGSGVRTFVDHQAAVDSPV
Sbjct: 1   MCQLLGMNCNTPTDIVFSFTGFATRGGLTDHHRDGWGIAFFEGSGVRTFVDHQAAVDSPV 60

Query: 61  AALIKRYPIKSQHVIAHIRKATQGRVTLANCHPFVRELWGRYWVFAHNGDLKNFTPTLDG 120
           A LIKRYPIKSQHVIAHIRKATQGRVTLANCHPFVRELWGRYWVFAHNGDLKNFTP LDG
Sbjct: 61  AELIKRYPIKSQHVIAHIRKATQGRVTLANCHPFVRELWGRYWVFAHNGDLKNFTPELDG 120

Query: 121 PFRPVGTTDSELSFCYILQELRRRFGDTLPLLAELRAALREIVDGIASHGTFNMLLSDGS 180
           P+RPVGTTDSEL+FCYILQE+R+RFG TLPLLAELRAALREIVD IA HGTFNMLLSDGS
Sbjct: 121 PYRPVGTTDSELAFCYILQEMRKRFGHTLPLLAELRAALREIVDHIAGHGTFNMLLSDGS 180

Query: 181 ALFTHCSTNLYYIVRQHPFTTAKLSDEDLSVDFSEVTTSNDRVAVIVTQPLTDNEVWTQY 240
           AL+THCST+LYYIVRQHPF TAKLSD+DLSVDFSEVTTSNDRVAVIVTQPLTDNEVWTQY
Sbjct: 181 ALYTHCSTHLYYIVRQHPFATAKLSDDDLSVDFSEVTTSNDRVAVIVTQPLTDNEVWTQY 240

Query: 241 QPGEMKLFVDGTVVD 255
           Q GEMK+FVDG VV+
Sbjct: 241 QSGEMKVFVDGAVVE 255


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.324    0.138    0.433 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 796,514
Number of extensions: 31471
Number of successful extensions: 58
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 58
Number of HSP's successfully gapped: 1
Length of query: 255
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 172
Effective length of database: 1,226,865
Effective search space: 211020780
Effective search space used: 211020780
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 129 (54.3 bits)