BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4679.p (539 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300314074|ref|YP_003778166.1| choline dehydrogenase [Herbaspi... 1041 0.0 gi|300314045|ref|YP_003778137.1| choline dehydrogenase [Herbaspi... 333 3e-92 >gi|300314074|ref|YP_003778166.1| choline dehydrogenase [Herbaspirillum seropedicae SmR1] Length = 539 Score = 1041 bits (2691), Expect = 0.0, Method: Compositional matrix adjust. Identities = 496/539 (92%), Positives = 515/539 (95%) Query: 1 MQSAGQYDYIIIGAGTAGCVMANRLSRKTGKSVLLIEAGGRDDYLWIHIPVGYLYCINNP 60 MQSAGQYDYIIIGAGTAGCVMANRLSRKTGK VLLIEAG +DDY+WIHIPVGYLYCINNP Sbjct: 1 MQSAGQYDYIIIGAGTAGCVMANRLSRKTGKKVLLIEAGAKDDYIWIHIPVGYLYCINNP 60 Query: 61 RTDWMFRTEADAGLNGRSLIYPRGKVLGGCSSINGMIYMRGQARDYDHWAEVCGDDSWRW 120 RTDWMFRTEADAGLNGRSLIYPRGKVLGGCSSINGMIYMRGQARDYDHWA+V GDDSWRW Sbjct: 61 RTDWMFRTEADAGLNGRSLIYPRGKVLGGCSSINGMIYMRGQARDYDHWADVTGDDSWRW 120 Query: 121 QNVLPWFRKSEDYHLGSSEFHGAGGEWRVEKQRLRWDILDAFRDAAAENGIAKVEDFNQG 180 QNVLP F+KSEDYHLG+ +FHGAGGEWRVEKQRLRWDILDAFRDAAAENGI KVEDFN G Sbjct: 121 QNVLPLFKKSEDYHLGAGQFHGAGGEWRVEKQRLRWDILDAFRDAAAENGIPKVEDFNCG 180 Query: 181 DNEGCSYFDVNQKRGVRWNASKAFLRPAMKDGNLTIMTGSHVSRLRMEQGEGGPVCTGVE 240 DNEGC YFDVNQKRGVRWNASKAFLRPAMKDGNLTIMTGSHVSRLRMEQGE GPVCTGVE Sbjct: 181 DNEGCGYFDVNQKRGVRWNASKAFLRPAMKDGNLTIMTGSHVSRLRMEQGEQGPVCTGVE 240 Query: 241 FTGGGSQWFAQAKETILCAGAIGSPHILQMSGIADPALLQQHQIPVVHALPGVGENLQDH 300 FTGGGS WFA+AKETILCAGAIGSPHILQMSGIADPALLQQHQIPVVHALPGVGENLQDH Sbjct: 241 FTGGGSAWFAEAKETILCAGAIGSPHILQMSGIADPALLQQHQIPVVHALPGVGENLQDH 300 Query: 301 LQMRMVFKVDGARTLNAMASTLLGKMKIGLEYLFMQSGPMSMAPSQLGAFAKSDAQQASA 360 LQMRMVFKV+GA+TLNAMASTL+GKM+IGL+YLF QSGPMSMAPSQLGAFAKSDAQQASA Sbjct: 301 LQMRMVFKVNGAKTLNAMASTLVGKMQIGLQYLFTQSGPMSMAPSQLGAFAKSDAQQASA 360 Query: 361 NLQYHVQPLSLEKFGDPLHAFPAFTASVCNLRPTSRGHVRLAAADPALAPRITTNYLSTE 420 NLQYHVQPLSLEKFGDPLHAFPAFTASVCNLRPTSRGHVRLA+ D ALAPRITTNYLSTE Sbjct: 361 NLQYHVQPLSLEKFGDPLHAFPAFTASVCNLRPTSRGHVRLASGDHALAPRITTNYLSTE 420 Query: 421 ADLTVAADALRLTRRIVASPALARYRPEEYKPGLQYQSQAQLQRAAGDVGTTIFHPVGTC 480 DL VAA+ALRLTRRI ASPAL+RYRPEEYKPG Y+++ L RAAG+VGTTIFHPVGTC Sbjct: 421 EDLKVAANALRLTRRIAASPALSRYRPEEYKPGAHYETEEDLYRAAGEVGTTIFHPVGTC 480 Query: 481 RMGRSDDVMAVVDAQCRVRGVAGLSVADASVMPSITSGNTNSPTVMIAEKVASSLLSRA 539 RMGRSDD MAVVDAQ RVRGV GLSVADASVMPSITSGNTNSPTVMIAEKVASSLLSRA Sbjct: 481 RMGRSDDAMAVVDAQGRVRGVGGLSVADASVMPSITSGNTNSPTVMIAEKVASSLLSRA 539 >gi|300314045|ref|YP_003778137.1| choline dehydrogenase [Herbaspirillum seropedicae SmR1] Length = 543 Score = 333 bits (853), Expect = 3e-92, Method: Compositional matrix adjust. Identities = 206/538 (38%), Positives = 282/538 (52%), Gaps = 16/538 (2%) Query: 7 YDYIIIGAGTAGCVMANRLSRKTGKSVLLIEAGGRDDYLWIHIPVGYLYCINN--PRTDW 64 +DY+I+G G+AG +A RLS SV L+EAGG+ D L + P + + +W Sbjct: 3 FDYVIVGGGSAGATLAARLSEDPRISVCLLEAGGQGDSLLVRTPAAVVAMLPGYGKLNNW 62 Query: 65 MFRTEADAGLNGRSLIYPRGKVLGGCSSINGMIYMRGQARDYDHWAEVCGDDSWRWQNVL 124 +T GLNGR PRG+ LGG S+IN M+Y+RGQ +DYD WA+ G W W++VL Sbjct: 63 ALQTTPQPGLNGRRGYQPRGRALGGSSAINAMLYVRGQRQDYDGWAQ-AGCPGWDWESVL 121 Query: 125 PWFRKSEDYHLGSSEFHGAGGEWRVEKQRLRWDILDAFRDAAAENGIAKVEDFNQGDNEG 184 P+F+++E+ G+ +HGA G +V +Q I AF +A G +DFN GDNEG Sbjct: 122 PYFKRAENNVRGADAWHGASGPLQVSEQNRPRPITRAFIEAGQARGHRLCQDFNTGDNEG 181 Query: 185 CSYFDVNQ-----KRGVRWNASKAFLRPAM-KDGNLTIMTGSHVSRLRMEQGEGGPVCTG 238 + V Q RG R +A+ A+L P M + NL+++ RL E G G Sbjct: 182 VGLYQVTQFHTPAHRGERCSAAAAYLHPVMGQRPNLSVLRQVRAQRLLFE----GKRAIG 237 Query: 239 VEF-TGGGSQWFAQAKETILCAGAIGSPHILQMSGIADPALLQQHQIPVVHALPGVGENL 297 V + G A+E I+ AGA GSP +LQ+SG+ + H I + H LPGVG+NL Sbjct: 238 VAYRQQQGDAQVRAAREVIIAAGAFGSPQLLQLSGVGRSDDILPHGIALHHPLPGVGQNL 297 Query: 298 QDHLQMRMVFKVDGARTLNAMASTLLGKMKIGLEYLFMQSGPMSMAPSQLGAFAKSDAQQ 357 QDHL + L + L + G ++ ++ AF K+ + Sbjct: 298 QDHLDFTQGWTTRDTDNFGLGVVGGLRLLGQLLPWKRHGEGLIATPFAEGAAFLKTRPEL 357 Query: 358 ASANLQYHVQPLSLEKFGDPLHAFPAFTASVCNLRPTSRGHVRLAAADPALAPRITTNYL 417 ++Q H ++ LHA F+ +C LRP SRG V L +ADP P I YL Sbjct: 358 DRPDIQLHFCIAIVDDHARKLHAGYGFSLHMCMLRPHSRGRVGLQSADPMADPLIDPGYL 417 Query: 418 STEADLTVAADALRLTRRIVASPALARYRPEEYKPGLQYQSQAQLQRAAGDVGTTIFHPV 477 S DL D R+ R+IV + L Y E G AQ + TI+HP Sbjct: 418 SDPRDLATMIDGARMARQIVMTEPLRHYCRRELFGGRDDMDDAQWESMIRHRADTIYHPA 477 Query: 478 GTCRMGRSDDVMAVVDAQCRVRGVAGLSVADASVMPSITSGNTNSPTVMIAEKVASSL 535 GTCRMG +D MAVVDAQ RV G+ GL V DASVMP++ SGNTN+PT+MIAEK A + Sbjct: 478 GTCRMG--EDAMAVVDAQLRVHGLQGLRVVDASVMPTLVSGNTNAPTIMIAEKAADMI 533 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.134 0.411 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,745,692 Number of extensions: 76164 Number of successful extensions: 224 Number of sequences better than 1.0e-08: 2 Number of HSP's gapped: 218 Number of HSP's successfully gapped: 2 Length of query: 539 Length of database: 1,619,870 Length adjustment: 90 Effective length of query: 449 Effective length of database: 1,193,720 Effective search space: 535980280 Effective search space used: 535980280 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 133 (55.8 bits)