BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4678.p (256 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300314073|ref|YP_003778165.1| amino acid ABC transporter ATPa... 523 e-150 gi|300310523|ref|YP_003774615.1| branched-chain amino acid ABC t... 196 2e-51 gi|300309521|ref|YP_003773613.1| branched-chain amino acid ABC t... 196 2e-51 gi|300312239|ref|YP_003776331.1| amino acid ABC transporter ATPa... 186 1e-48 gi|300313934|ref|YP_003778026.1| branched-chain amino acid ABC t... 184 7e-48 >gi|300314073|ref|YP_003778165.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 256 Score = 523 bits (1347), Expect = e-150, Method: Compositional matrix adjust. Identities = 253/256 (98%), Positives = 254/256 (99%) Query: 1 MTDVILETRNLTKEFKGFTAVSAVNLQIERGHIHALIGPNGAGKTTCFNLLTKFLVPTSG 60 MTDVILETRNLTKEFKGFTAVSAVNLQIERGHIHALIGPNGAGKTTCFNLLTKFLVPTSG Sbjct: 1 MTDVILETRNLTKEFKGFTAVSAVNLQIERGHIHALIGPNGAGKTTCFNLLTKFLVPTSG 60 Query: 61 QILFNGRDITMDAPAQIARQGIIRSFQISAVFPHMSVLENVRIGLQRKLGTSFHFWKNGE 120 QILFNGRDITMDAPAQIARQGIIRSFQISAVFPHMSVLENVRIGLQRKLGTSFHFWKNGE Sbjct: 61 QILFNGRDITMDAPAQIARQGIIRSFQISAVFPHMSVLENVRIGLQRKLGTSFHFWKNGE 120 Query: 121 SLKQLDERAMQLLEEVDLTSFARTTTVDLPYGRKRALEIATTLAMEPELMLLDEPTQGMG 180 SLKQLDERAMQLLEEVDLTSFA TTTVDLPYGRKRALEIATTLAMEPELMLLDEPTQGMG Sbjct: 121 SLKQLDERAMQLLEEVDLTSFAHTTTVDLPYGRKRALEIATTLAMEPELMLLDEPTQGMG 180 Query: 181 HEDVDRVTALIKKVSAGRTILMVEHNMSVISGICDRISVLQRGALLAEGSYEEVSRNPQV 240 HEDVDRVTALIKKVSAGRTILMVEHNMSVI+GICDRISVLQRGALLAEGSYEEVSRNPQV Sbjct: 181 HEDVDRVTALIKKVSAGRTILMVEHNMSVIAGICDRISVLQRGALLAEGSYEEVSRNPQV 240 Query: 241 MEAYMGSTSGELQGAH 256 MEAYMGSTS ELQGAH Sbjct: 241 MEAYMGSTSAELQGAH 256 >gi|300310523|ref|YP_003774615.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 255 Score = 196 bits (498), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 102/253 (40%), Positives = 156/253 (61%), Gaps = 6/253 (2%) Query: 1 MTDVILETRNLTKEFKGFTAVSAVNLQIERGHIHALIGPNGAGKTTCFNLLTKFLVPTSG 60 M+ +L+ R+++K F G A++ V + IERG I+ LIGPNGAGKTT FN++T P +G Sbjct: 1 MSQTLLKIRDVSKRFGGLQALNGVGITIERGQIYGLIGPNGAGKTTFFNVITGLYQPDTG 60 Query: 61 QILFNGRDITMDAPAQIARQGIIRSFQISAVFPHMSVLENVRIGL-----QRKLGTSFHF 115 +G+ + AP ++A+ GI R+FQ +F M+VLENV +G Q G F Sbjct: 61 TFELDGKPYSPSAPHEVAKAGIARTFQNIRLFGEMTVLENVMVGCHVRTKQNVFGAVFRH 120 Query: 116 WKNGESLKQLDERAMQLLEEVDLTSFARTTTVDLPYGRKRALEIATTLAMEPELMLLDEP 175 E + E++ +LL+ V + FA+ T L YG +R LEIA LA +P+L+ LDEP Sbjct: 121 KAAREEEAAIREKSQKLLDFVGIGQFAKRTARHLSYGDQRRLEIARALATDPQLLALDEP 180 Query: 176 TQGMGHEDVDRVTALIKKVSA-GRTILMVEHNMSVISGICDRISVLQRGALLAEGSYEEV 234 GM + + L+ K+ A G+TIL++EH++ ++ G+C+RI+VL G +AEG +V Sbjct: 181 AAGMNATEKLGLRELLVKIQAEGKTILLIEHDVKLMMGLCNRITVLDYGKPIAEGVPADV 240 Query: 235 SRNPQVMEAYMGS 247 +NP V+EAY+G+ Sbjct: 241 QKNPAVIEAYLGA 253 >gi|300309521|ref|YP_003773613.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 255 Score = 196 bits (498), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 102/253 (40%), Positives = 156/253 (61%), Gaps = 6/253 (2%) Query: 1 MTDVILETRNLTKEFKGFTAVSAVNLQIERGHIHALIGPNGAGKTTCFNLLTKFLVPTSG 60 M+ +L+ R+++K F G A++ V + IERG I+ LIGPNGAGKTT FN++T P +G Sbjct: 1 MSQTLLKIRDVSKRFGGLQALNGVGITIERGQIYGLIGPNGAGKTTFFNVITGLYQPDTG 60 Query: 61 QILFNGRDITMDAPAQIARQGIIRSFQISAVFPHMSVLENVRIGL-----QRKLGTSFHF 115 +G+ + AP ++A+ GI R+FQ +F M+VLENV +G Q G F Sbjct: 61 TFELDGKPYSPSAPHEVAKAGIARTFQNIRLFGEMTVLENVMVGCHVRTRQNVFGAVFRH 120 Query: 116 WKNGESLKQLDERAMQLLEEVDLTSFARTTTVDLPYGRKRALEIATTLAMEPELMLLDEP 175 E + E++ +LL+ V + FA+ T L YG +R LEIA LA +P+L+ LDEP Sbjct: 121 KAAREEEAAIREKSQKLLDFVGIGQFAKRTARHLSYGDQRRLEIARALATDPQLLALDEP 180 Query: 176 TQGMGHEDVDRVTALIKKVSA-GRTILMVEHNMSVISGICDRISVLQRGALLAEGSYEEV 234 GM + + L+ K+ A G+TIL++EH++ ++ G+C+RI+VL G +AEG +V Sbjct: 181 AAGMNATEKLGLRELLVKIQAEGKTILLIEHDVKLMMGLCNRITVLDYGKPIAEGVPADV 240 Query: 235 SRNPQVMEAYMGS 247 +NP V+EAY+G+ Sbjct: 241 QKNPAVIEAYLGA 253 >gi|300312239|ref|YP_003776331.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 253 Score = 186 bits (473), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 101/252 (40%), Positives = 149/252 (59%), Gaps = 10/252 (3%) Query: 4 VILETRNLTKEFKGFTAVSAVNLQIERGHIHALIGPNGAGKTTCFNLLTKFLVPTSGQIL 63 ++L+ +++K F G + VN + +G I LIGPNGAGKTT FNL+T L +SG I Sbjct: 1 MLLQLNDISKNFGGLQVLQGVNFNVRQGEIFGLIGPNGAGKTTVFNLITGLLRASSGSIR 60 Query: 64 FNGRDITMDAPAQIARQGIIRSFQISAVFPHMSVLENVRIGLQRKLGT-------SFHFW 116 FN DI AP +I +GI R+FQ VF M++LENV +G+ L + + Sbjct: 61 FNDDDIGAVAPHKITERGIARTFQNIRVFKEMTLLENVVVGMHDHLNYGVASMLLNLGGF 120 Query: 117 KNGESLKQLDERAMQLLEEVDLTSFARTTTVDLPYGRKRALEIATTLAMEPELMLLDEPT 176 +N E K+ ERA++LL V L A L YG +R LE A LA +P+L+LLDEP Sbjct: 121 RNAE--KEARERALELLSWVRLDHKAHMLADSLSYGEQRKLEFARALATKPKLLLLDEPV 178 Query: 177 QGMG-HEDVDRVTALIKKVSAGRTILMVEHNMSVISGICDRISVLQRGALLAEGSYEEVS 235 GM E + ++ ++ G TI M+EH+M + G+C+RI+VL G ++AEG+ +++ Sbjct: 179 AGMNPAEKTELMSEIVNIKQRGFTIFMIEHDMRFVMGLCERIAVLNFGKIIAEGTPDQIK 238 Query: 236 RNPQVMEAYMGS 247 N +V+EAY+G Sbjct: 239 NNQEVIEAYLGK 250 >gi|300313934|ref|YP_003778026.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 255 Score = 184 bits (466), Expect = 7e-48, Method: Compositional matrix adjust. Identities = 94/248 (37%), Positives = 151/248 (60%), Gaps = 1/248 (0%) Query: 1 MTDVILETRNLTKEFKGFTAVSAVNLQIERGHIHALIGPNGAGKTTCFNLLTKFLVPTSG 60 M+ IL+ N+TK + FTAV+ + L IE G +H++IGPNGAGKTT F+ LT T G Sbjct: 1 MSRPILQAVNVTKRYGKFTAVNGITLDIEAGTVHSVIGPNGAGKTTLFHTLTGTTPITEG 60 Query: 61 QILFNGRDITMDAPAQIARQGIIRSFQISAVFPHMSVLENVRIGLQ-RKLGTSFHFWKNG 119 IL G ++ + ++G+ RSFQ++++FP++SV EN+R+ Q R + + WK Sbjct: 61 SILVEGEEVAHLPGNRRVQKGLARSFQVTSLFPNLSVRENLRLAAQGRAPLAALNPWKRA 120 Query: 120 ESLKQLDERAMQLLEEVDLTSFARTTTVDLPYGRKRALEIATTLAMEPELMLLDEPTQGM 179 E A +LL + L + A+ +L +G++R LE+ +A P+++ LDEPT GM Sbjct: 121 EQFSAACALADELLARLSLQAVAQRACAELSHGQQRRLEVGMAMAGRPKVIFLDEPTSGM 180 Query: 180 GHEDVDRVTALIKKVSAGRTILMVEHNMSVISGICDRISVLQRGALLAEGSYEEVSRNPQ 239 G +D+ + LI + T++++EHNM ++ I DRI+V+Q G +LA+G E+ + + Sbjct: 181 GIDDIAEMKQLIHGLRRDYTVVLIEHNMDIVMDISDRITVMQLGQILAQGKPAEIRSDER 240 Query: 240 VMEAYMGS 247 V AY+GS Sbjct: 241 VRRAYLGS 248 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.134 0.378 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 727,610 Number of extensions: 29151 Number of successful extensions: 524 Number of sequences better than 1.0e-08: 124 Number of HSP's gapped: 302 Number of HSP's successfully gapped: 132 Length of query: 256 Length of database: 1,619,870 Length adjustment: 83 Effective length of query: 173 Effective length of database: 1,226,865 Effective search space: 212247645 Effective search space used: 212247645 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)