BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4677.p (242 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300314072|ref|YP_003778164.1| amino acid ABC transporter ATPa... 489 e-140 gi|300313935|ref|YP_003778027.1| branched-chain amino acid ABC t... 215 3e-57 gi|300311769|ref|YP_003775861.1| branched-chain amino acid ABC t... 200 7e-53 gi|300311566|ref|YP_003775658.1| branched-chain amino acid ABC t... 184 5e-48 gi|300313283|ref|YP_003777375.1| branched-chain amino acid ABC t... 182 1e-47 >gi|300314072|ref|YP_003778164.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 242 Score = 489 bits (1259), Expect = e-140, Method: Compositional matrix adjust. Identities = 238/242 (98%), Positives = 242/242 (100%) Query: 1 MTTSTSSAPLVLQISDLQSWYGESHILHNVNLNVHQGEVVTLLGRNGAGRTTTLRSIMGL 60 MTTS+SSAPLVLQISDLQSWYGESHILHNVNLNVHQGEVVTLLGRNGAGRTTTLRSIMGL Sbjct: 1 MTTSSSSAPLVLQISDLQSWYGESHILHNVNLNVHQGEVVTLLGRNGAGRTTTLRSIMGL 60 Query: 61 VGTRKGSIKINGQETIHLATHKIAHYGVGYCPEERGIFSSLSAEENLMLPPFVSKTDRGM 120 VGTRKGSIKINGQETI+LATHKIAH+GVGYCPEERGIFSSLSAEENLMLPPFVSKTD+GM Sbjct: 61 VGTRKGSIKINGQETINLATHKIAHHGVGYCPEERGIFSSLSAEENLMLPPFVSKTDKGM 120 Query: 121 SIDEIYEMFPNLKERRNSQGTRLSGGEQQMLAVARILRTGARLLLLDEISEGLAPVIVQA 180 SIDEIYEMFPNLKERRNSQGTRLSGGEQQMLAVARILRTGARLLLLDEISEGLAPVIVQA Sbjct: 121 SIDEIYEMFPNLKERRNSQGTRLSGGEQQMLAVARILRTGARLLLLDEISEGLAPVIVQA 180 Query: 181 LARMITTLKAKGYTIVMVEQNFRFAAPLADRFYVMEHGQIVESFASSQLEAKMQTLNELL 240 LARMITTLKAKGYTIVMVEQNFRFAAPLADRFYVMEHGQIVESFASSQLEAKMQTLNELL Sbjct: 181 LARMITTLKAKGYTIVMVEQNFRFAAPLADRFYVMEHGQIVESFASSQLEAKMQTLNELL 240 Query: 241 GV 242 GV Sbjct: 241 GV 242 >gi|300313935|ref|YP_003778027.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 234 Score = 215 bits (548), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 113/233 (48%), Positives = 154/233 (66%), Gaps = 3/233 (1%) Query: 10 LVLQISDLQSWYGESHILHNVNLNVHQGEVVTLLGRNGAGRTTTLRSIMGLVGTRKGSIK 69 ++LQ+ D+ +YG+SHIL V+L V GEVVTLLGRNGAG+TTTL+SI+G+V +G + Sbjct: 1 MILQVEDVHGYYGKSHILQGVSLQVDAGEVVTLLGRNGAGKTTTLKSIVGVVPPVQGRVL 60 Query: 70 INGQETIHLATHKIAHYGVGYCPEERGIFSSLSAEENLMLPPFVSKTDRGMSIDEIYEMF 129 GQ L ++KIA GV PE RGIF L+ EENL + ++ + ++EIY +F Sbjct: 61 FEGQLISGLPSYKIAARGVCLVPEHRGIFKLLTVEENLTM---AARKESAWGLEEIYAIF 117 Query: 130 PNLKERRNSQGTRLSGGEQQMLAVARILRTGARLLLLDEISEGLAPVIVQALARMITTLK 189 P LKERR + G +LSGGEQQMLA+AR L T R+L+LDE EGLAPVIV + I +K Sbjct: 118 PRLKERRKNGGGQLSGGEQQMLAIARALMTHPRVLMLDEPVEGLAPVIVDEIVAQIRQIK 177 Query: 190 AKGYTIVMVEQNFRFAAPLADRFYVMEHGQIVESFASSQLEAKMQTLNELLGV 242 A G +I++VEQN LADR Y++E G+IV ++++ A + LGV Sbjct: 178 ATGMSIILVEQNLEVCTQLADRHYIVEQGRIVYHGSNAEFLADEGVKDRYLGV 230 >gi|300311769|ref|YP_003775861.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 233 Score = 200 bits (509), Expect = 7e-53, Method: Compositional matrix adjust. Identities = 103/227 (45%), Positives = 146/227 (64%), Gaps = 5/227 (2%) Query: 11 VLQISDLQSWYGESHILHNVNLNVHQGEVVTLLGRNGAGRTTTLRSIMGLVGTRKGSIKI 70 +LQ+ L WY ++HIL ++L + GEVV L+GRNGAG++TTL+++MGL+ R+G I++ Sbjct: 5 LLQVQGLHGWYADAHILFGLDLEIRAGEVVALMGRNGAGKSTTLKALMGLLERRQGQIRL 64 Query: 71 NGQETIHLATHKIAHYGVGYCPEERGIFSSLSAEENL---MLPPFVSKTDRGMSIDEIYE 127 G++ LA H+ A G+GY PE+R IF+ LS ENL PP + ++E Sbjct: 65 AGRDIGKLAPHQRARLGLGYVPEDRRIFTELSVLENLETGRQPPRPGAPH--WTPQALFE 122 Query: 128 MFPNLKERRNSQGTRLSGGEQQMLAVARILRTGARLLLLDEISEGLAPVIVQALARMITT 187 +FPNL G R+SGGEQQML +AR L RLLLLDE SEG+APVIV+ +A MI Sbjct: 123 LFPNLGAMPQRLGGRMSGGEQQMLTIARTLMGNPRLLLLDEPSEGVAPVIVEQMAAMIQE 182 Query: 188 LKAKGYTIVMVEQNFRFAAPLADRFYVMEHGQIVESFASSQLEAKMQ 234 LK G I++ EQN FA+ + DR Y+++ G+IV + + L+A Q Sbjct: 183 LKRSGIAILLCEQNLHFASLVCDRGYLLDQGRIVAAGTPASLQAHQQ 229 >gi|300311566|ref|YP_003775658.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 238 Score = 184 bits (467), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 100/235 (42%), Positives = 147/235 (62%), Gaps = 4/235 (1%) Query: 10 LVLQISDLQSWYGESHILHNVNLNVHQGEVVTLLGRNGAGRTTTLRSIMGLVGTRKGSIK 69 L+L ++ LQ+ YG S +LH V+L V +GE+V++LGRNGAGR+T L+++MGL+ +R G + Sbjct: 6 LLLSVTGLQAGYGHSRVLHGVDLTVQRGEIVSILGRNGAGRSTLLKALMGLLPSR-GDCR 64 Query: 70 INGQETIHLATHKIAHYGVGYCPEERGIFSSLSAEENLML--PPFVSKTDRGMSIDEIYE 127 G++ L TH IA G+GY PE R +F +LS +NL+L P + RG D+I+ Sbjct: 65 FEGRDISGLPTHAIARLGMGYVPESREVFPTLSVAQNLLLGRKPG-PQPGRGWCEDDIHA 123 Query: 128 MFPNLKERRNSQGTRLSGGEQQMLAVARILRTGARLLLLDEISEGLAPVIVQALARMITT 187 +FP L +RR LSGGEQQMLA+ R L LLL+DE +EGLAP +V+ +AR + Sbjct: 124 LFPALYKRRQVAAAALSGGEQQMLALGRALLGNPSLLLVDEPTEGLAPQMVEQVARALQE 183 Query: 188 LKAKGYTIVMVEQNFRFAAPLADRFYVMEHGQIVESFASSQLEAKMQTLNELLGV 242 L+ +G +++VEQ A L+ R YVM G++V + L A+ E L + Sbjct: 184 LRTRGVAVLLVEQKQALALELSQRVYVMGRGEMVFEGTPTGLSAQETVQREWLAL 238 >gi|300313283|ref|YP_003777375.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 233 Score = 182 bits (463), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 101/235 (42%), Positives = 150/235 (63%), Gaps = 5/235 (2%) Query: 9 PLVLQISDLQSWYGESHILHNVNLNVHQGEVVTLLGRNGAGRTTTLRSIMGLVGTRKGSI 68 P +L + + + YG+S +L +V+ + +GE + LLGRNG G+T+ L ++MGL GSI Sbjct: 2 PELLALDRVSAGYGQSIVLEDVSFTMQEGESLALLGRNGVGKTSLLITLMGLTRLHGGSI 61 Query: 69 KINGQETIHLATHKIAHYGVGYCPEERGIFSSLSAEENLMLPPFVSKTDRGMSIDEIYEM 128 + G + +ATHK AH G+G+ P+ER +F SLS EE+L + K D + +IY++ Sbjct: 62 RWRGGDIARVATHKRAHAGLGWVPQERFMFPSLSVEEHLTVVERGGKWD----LQKIYQI 117 Query: 129 FPNLKERRNSQGTRLSGGEQQMLAVARILRTGARLLLLDEISEGLAPVIVQALARMITTL 188 FP L ERR++ G +LSGGEQQMLA+AR L +LLLDE EGLAP+IVQ L ++I L Sbjct: 118 FPRLHERRHNMGNQLSGGEQQMLAIARALMVSPSILLLDEPMEGLAPIIVQELLKVIRRL 177 Query: 189 KA-KGYTIVMVEQNFRFAAPLADRFYVMEHGQIVESFASSQLEAKMQTLNELLGV 242 + +G ++++VEQ+ R A L R V++ G+IV + S L A L+ L+ V Sbjct: 178 VSEEGMSVIVVEQHARMALSLTQRAIVLDRGRIVHASDSQSLLADGDKLDRLVAV 232 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.318 0.133 0.371 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 695,745 Number of extensions: 27946 Number of successful extensions: 452 Number of sequences better than 1.0e-08: 111 Number of HSP's gapped: 314 Number of HSP's successfully gapped: 122 Length of query: 242 Length of database: 1,619,870 Length adjustment: 83 Effective length of query: 159 Effective length of database: 1,226,865 Effective search space: 195071535 Effective search space used: 195071535 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 129 (54.3 bits)