BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4676.p (402 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300314071|ref|YP_003778163.1| amino acid ABC transporter peri... 753 0.0 gi|300309490|ref|YP_003773582.1| branched-chain amino acid ABC t... 577 e-166 gi|300312339|ref|YP_003776431.1| branched-chain amino acid ABC t... 555 e-159 gi|300312372|ref|YP_003776464.1| branched-chain amino acid ABC t... 356 2e-99 gi|300312955|ref|YP_003777047.1| amino acid ABC transporter peri... 96 7e-21 >gi|300314071|ref|YP_003778163.1| amino acid ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 402 Score = 753 bits (1945), Expect = 0.0, Method: Compositional matrix adjust. Identities = 383/402 (95%), Positives = 397/402 (98%) Query: 1 MKLKAMALAVTAAAAAFATAPASAQISGDVIKIGFITDISGVYSDIDGQGGAEAIKMAIA 60 MKLKAMALA+TAAAA FA+A ASAQISGDVIKIGFITDISGVYSDIDGQGGAEAIKMAIA Sbjct: 1 MKLKAMALAITAAAAVFASASASAQISGDVIKIGFITDISGVYSDIDGQGGAEAIKMAIA 60 Query: 61 DMGGAINGKKIELVVADHQNKADVAASKAREWFDQQGVDVLIGGTNSGTALASAKVAAEK 120 DMGGAINGKKIEL+VADHQNKADVAASKAREWFDQQGVD+LIGGTNSGTALASAKVAAEK Sbjct: 61 DMGGAINGKKIELLVADHQNKADVAASKAREWFDQQGVDMLIGGTNSGTALASAKVAAEK 120 Query: 121 KKVYIAVGAGTARLTNEECSPYTMHYAYDTVALAKGTGSAVVKQGGKSWFFLTADYAFGH 180 KKVY+ +GAG+ARLTNEECSPYT+HYAYDTVALAKGTGSAVVKQGGKSWFFLTADYAFGH Sbjct: 121 KKVYMQIGAGSARLTNEECSPYTVHYAYDTVALAKGTGSAVVKQGGKSWFFLTADYAFGH 180 Query: 181 SLEADTANVVKASGGTVVGSVKHPLGASDFSSFLLQAQSSKAQIIGLANAGGDFINSVKA 240 SLE+DTANVVKASGGTVVG+VKHPLGASDFSSFLLQAQSSKAQIIGLANAGGDFINSVKA Sbjct: 181 SLESDTANVVKASGGTVVGAVKHPLGASDFSSFLLQAQSSKAQIIGLANAGGDFINSVKA 240 Query: 241 ANEFGITKTAKLAGLLVFINDVHSLTLKNTEGLYLTDSWYWDTNDDTRAFAKRYFAVRKK 300 ANEFGITKTAKLAGLLVFINDVHSLTLKNTEGLYLTDSWYWD N++TRAFAKRYFAVRKK Sbjct: 241 ANEFGITKTAKLAGLLVFINDVHSLTLKNTEGLYLTDSWYWDANEETRAFAKRYFAVRKK 300 Query: 301 MPSSLQAADYSAALQYLKIVKEIGTDDSDKVMAALRKAKFNDMYQKNGYLRADGRVVHDM 360 MPSSLQAADYSAALQYLK+VKEIGTDDSDKVMAALRKAKFNDMYQKNGYLRADGRV+HDM Sbjct: 301 MPSSLQAADYSAALQYLKVVKEIGTDDSDKVMAALRKAKFNDMYQKNGYLRADGRVMHDM 360 Query: 361 YLYQVKAQSESKYPWDYYKLVQTIPGEQAWTTKAESKCAAWK 402 YLYQVKAQSESKYPWDYYKLVQTIP EQAWTTKAESKCAAWK Sbjct: 361 YLYQVKAQSESKYPWDYYKLVQTIPAEQAWTTKAESKCAAWK 402 >gi|300309490|ref|YP_003773582.1| branched-chain amino acid ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 404 Score = 577 bits (1487), Expect = e-166, Method: Compositional matrix adjust. Identities = 277/400 (69%), Positives = 322/400 (80%) Query: 3 LKAMALAVTAAAAAFATAPASAQISGDVIKIGFITDISGVYSDIDGQGGAEAIKMAIADM 62 ++ AL+ TA A A SAQ +GD IKIGFITD+SG Y+D DGQGG EAI+MAIAD Sbjct: 5 IRRAALSATACALLGAAILPSAQAAGDTIKIGFITDMSGTYADFDGQGGVEAIRMAIADA 64 Query: 63 GGAINGKKIELVVADHQNKADVAASKAREWFDQQGVDVLIGGTNSGTALASAKVAAEKKK 122 GGAINGKK+ELV ADHQNKAD+AA+KAREWFD+ GVD+L+GG NS +LA KVA EKKK Sbjct: 65 GGAINGKKVELVFADHQNKADIAANKAREWFDRDGVDMLVGGVNSAASLAMGKVAGEKKK 124 Query: 123 VYIAVGAGTARLTNEECSPYTMHYAYDTVALAKGTGSAVVKQGGKSWFFLTADYAFGHSL 182 V+I+VGAGT R TNEEC+ YT+ YAYDT ALA+GTG+A+ +QGGKSW+FLTADYAFG SL Sbjct: 125 VFISVGAGTTRQTNEECNAYTIQYAYDTTALARGTGAAITRQGGKSWYFLTADYAFGTSL 184 Query: 183 EADTANVVKASGGTVVGSVKHPLGASDFSSFLLQAQSSKAQIIGLANAGGDFINSVKAAN 242 E DT+ VVK++GG VVG+ + PL SDFSSFLLQAQSSKAQI+GLA AGGD IN++KAAN Sbjct: 185 EKDTSEVVKSNGGNVVGATRVPLATSDFSSFLLQAQSSKAQILGLAVAGGDVINAIKAAN 244 Query: 243 EFGITKTAKLAGLLVFINDVHSLTLKNTEGLYLTDSWYWDTNDDTRAFAKRYFAVRKKMP 302 EFG+ KT KLAGLL+FIND HSL L T+G+YLTD WYWD ND TRA+A RYF KKMP Sbjct: 245 EFGVNKTMKLAGLLIFINDTHSLGLSLTQGMYLTDGWYWDLNDQTRAWANRYFMKMKKMP 304 Query: 303 SSLQAADYSAALQYLKIVKEIGTDDSDKVMAALRKAKFNDMYQKNGYLRADGRVVHDMYL 362 S QA D SA QYLK VK +G+ D+DKVM LRK + ND + NG +R DGR+VHDMYL Sbjct: 305 SMFQAGDASAVGQYLKAVKAVGSTDADKVMDYLRKNRINDFFTSNGVVRPDGRMVHDMYL 364 Query: 363 YQVKAQSESKYPWDYYKLVQTIPGEQAWTTKAESKCAAWK 402 +VK SESK PWDYYKLVQTIPGEQA+ TKAESKCA WK Sbjct: 365 MEVKKPSESKRPWDYYKLVQTIPGEQAYMTKAESKCALWK 404 >gi|300312339|ref|YP_003776431.1| branched-chain amino acid ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 404 Score = 555 bits (1430), Expect = e-159, Method: Compositional matrix adjust. Identities = 264/395 (66%), Positives = 320/395 (81%), Gaps = 1/395 (0%) Query: 8 LAVTAAAAAFATAPASAQISGDVIKIGFITDISGVYSDIDGQGGAEAIKMAIADMGGAIN 67 LA A A + A AQ+S D ++IGFITD+SG Y+D DG GG EAI+MA+AD GG + Sbjct: 10 LAAACAIAGIFSGAALAQVSNDAVRIGFITDMSGPYADTDGLGGLEAIRMAVADFGGTVL 69 Query: 68 GKKIELVVADHQNKADVAASKAREWFDQQGVDVLIGGTNSGTALASAKVAAEKKKVYIAV 127 GK IE++ ADHQNKAD+AA++AREW D++G+D+LIGG NS TAL+ KV AEKK+VYI + Sbjct: 70 GKPIEVISADHQNKADIAATRAREWADERGLDMLIGGVNSATALSMNKVMAEKKRVYINI 129 Query: 128 GAGTARLTNEECSPYTMHYAYDTVALAKGTGSAVVKQGGKSWFFLTADYAFGHSLEADTA 187 GAGTARLTNEEC+PYT+HY YDTVALAKGT SAV+KQGGKSWFFL ADYAFGHSL DT+ Sbjct: 130 GAGTARLTNEECTPYTVHYEYDTVALAKGTASAVIKQGGKSWFFLVADYAFGHSLANDTS 189 Query: 188 NVVKASGGTVVGSVKHPLGASDFSSFLLQAQSSKAQIIGLANAGGDFINSVKAANEFGIT 247 VVKASGGTVVGS+KHP +SD SSFLLQAQ+SKAQI+GLANAG D +NS+KAA EFG+T Sbjct: 190 AVVKASGGTVVGSIKHPPQSSDLSSFLLQAQASKAQILGLANAGEDTVNSIKAAKEFGVT 249 Query: 248 KTAKLAGLLVFINDVHSLTLKNTEGLYLTDSWYWDTNDDTRAFAKRYFAVRKKMPSSLQA 307 KT KL GLL+ IND+H+L L N EGL +TDSWYWD ++ +R FA+R+F KKMPS+ QA Sbjct: 250 KTMKLVGLLMVINDIHALGLANAEGLMMTDSWYWDKDEPSRKFAERFFQKMKKMPSTHQA 309 Query: 308 ADYSAALQYLKIVKEIGTDDSDKVMAALRKAKFNDMYQKNGYLRADGRVVHDMYLYQVKA 367 A YSA YLK V+ IGTDDS KVMA L+K + +D Y K G +RADGR +HDMYLYQVK+ Sbjct: 310 AAYSATTTYLKAVQAIGTDDSTKVMAQLKKTRIDDFYNK-GSIRADGRNIHDMYLYQVKS 368 Query: 368 QSESKYPWDYYKLVQTIPGEQAWTTKAESKCAAWK 402 +ESK PWDY KL++TIPGEQA+T+ A+SKC+ K Sbjct: 369 PAESKKPWDYLKLLETIPGEQAFTSVADSKCSLLK 403 >gi|300312372|ref|YP_003776464.1| branched-chain amino acid ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 410 Score = 356 bits (914), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 191/391 (48%), Positives = 257/391 (65%), Gaps = 5/391 (1%) Query: 3 LKAMALAVTAAAAAFATAPASAQISGDVIKIGFITDISGVYSDIDGQGGAEAIKMAIAD- 61 L A A+A T + AA A PA AQ + +KIG +TD+SG YS + GQG A KMA+ D Sbjct: 10 LTAAAVACTVSLAATAI-PAWAQ-DANTVKIGVLTDMSGPYSAMGGQGSVVAAKMAVEDC 67 Query: 62 MGGAINGKKIELVVADHQNKADVAASKAREWFDQQGVDVLIGGTNSGTALASAKVAAEKK 121 + G KIE++ AD+QNK DV ++AREW D+ V+ + TNS ALA K+ +K Sbjct: 68 LKNECKGMKIEILSADNQNKPDVGVTRAREWLDRDKVEAIADLTNSSVALAVQKLIKDKG 127 Query: 122 KVYIAVGAGTARLTNEECSPYTMHYAYDTVALAKGTGSAVVKQGGKSWFFLTADYAFGHS 181 + + G T LT EC+P H+ +DT + A G +A+ K G KSW+F+T DYAFGHS Sbjct: 128 GIAMYSGPATGALTTAECAPNGFHWMFDTYSQAAGAAAALTKLGNKSWYFVTVDYAFGHS 187 Query: 182 LEADTANVVKASGGTVVGSVKHPLGASDFSSFLLQAQSSKAQIIGLANAGGDFINSVKAA 241 LE D ++VVKA+GGTVVGSV+HPL ASDFSSFLLQAQ+SKAQ+IGLA+ G D +N++K A Sbjct: 188 LEKDASDVVKANGGTVVGSVRHPLNASDFSSFLLQAQASKAQVIGLADGGTDVVNAIKQA 247 Query: 242 NEFGI-TKTAKLAGLLVFINDVHSLTLKNTEGLYLTDSWYWDTNDDTRAFAKRYFAVRKK 300 F + K +L LLVF++DVH+L L+ +GL TD +YWD ++ TRAF+KR+ + K Sbjct: 248 RSFAVGGKDQRLVALLVFLSDVHALGLEAAQGLVYTDGFYWDYDEQTRAFSKRFESQFKN 307 Query: 301 M-PSSLQAADYSAALQYLKIVKEIGTDDSDKVMAALRKAKFNDMYQKNGYLRADGRVVHD 359 + P+ +QA YS+ Q+LK T D V +R+ D +N +R DGRV+HD Sbjct: 308 IKPTMVQAGVYSSVYQFLKARAAAKTSDWKVVAQKMREIPIADAVMRNASIRPDGRVIHD 367 Query: 360 MYLYQVKAQSESKYPWDYYKLVQTIPGEQAW 390 MYLYQVK +ESK PWDY KL+ IP +QA+ Sbjct: 368 MYLYQVKTPAESKGPWDYLKLLSVIPAQQAF 398 >gi|300312955|ref|YP_003777047.1| amino acid ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 392 Score = 95.5 bits (236), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 102/381 (26%), Positives = 161/381 (42%), Gaps = 32/381 (8%) Query: 2 KLKAMALAVTAAAAAFATAPASAQISGDVIKIGFITDISGVYSDIDGQGGAEAIKMAIAD 61 +L +A AV A A A+ PA A DV+K+GF+T +SG S G E +A+ Sbjct: 3 RLSKVAGAVMMAMAVGASLPAQA---ADVVKVGFLTTLSGPAS-APGVDEREGFMLALKT 58 Query: 62 MGGAINGKKIELVVADHQNKADVAASKAREWFDQQGVDVLIGGTNSGTALASAKVAAEKK 121 +G + G E++V D Q D A A ++ VD+L G S LA A A K Sbjct: 59 LGNKLGGVPAEVIVVDDQFSPDAAKQGADRLIKREKVDILSGFVYSNILLAVAPAAFASK 118 Query: 122 KVYIAVGAGTARLTNEECSPYTMHYAYDTVALAKGTGSAVVKQGGKSWFFLTADYAFGHS 181 V ++ AG A+L C+PY +Y A + G + +G + + +Y G Sbjct: 119 TVVVSANAGPAQLAGAGCNPYFFSASYQNDAAHEAAGKLMADKGYQRVAIIAPNYPAGKD 178 Query: 182 LEADTANVVKASGGTVVGSVKHPLGASDFSSFLLQAQSSKAQIIGLANAGGDFINSVKAA 241 A +K + LG DF++ + Q +++ + GG +N VK Sbjct: 179 ASAGFKRFLKKDPAV---ELFPKLGQLDFATEIAQLRAANIDALYFFLPGGMGVNFVKQY 235 Query: 242 NEFGITKTAKLAGLLVFINDVHSLTLKNTE---GLYLTDSWYWD-TNDDTRAFAKRYFAV 297 G+ K+ ++ D L N + G+ T W D N+ RAF Y Sbjct: 236 AAAGMDP--KIVRVMP-AYDADQQMLSNGDLIAGVANTGQWSSDLPNEQNRAFVAAYLKE 292 Query: 298 RKKMPSSLQAADYSAALQYLKIVKEIG--TDDSDKVMAALRKAKF-----------NDMY 344 + PS + Y AA+ VK +G ++ + ++AA++ A F N Sbjct: 293 YGRQPSMFASQAYDAAMLIDSAVKAVGGKVENREALIAAIKTANFKSVRGGFRFAANHFP 352 Query: 345 QKNGYLR-----ADGRVVHDM 360 +N Y R ADG+ V++M Sbjct: 353 IQNQYARVVTKGADGKYVNNM 373 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.315 0.129 0.369 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,097,902 Number of extensions: 42283 Number of successful extensions: 204 Number of sequences better than 1.0e-08: 14 Number of HSP's gapped: 199 Number of HSP's successfully gapped: 14 Length of query: 402 Length of database: 1,619,870 Length adjustment: 87 Effective length of query: 315 Effective length of database: 1,207,925 Effective search space: 380496375 Effective search space used: 380496375 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 132 (55.5 bits)