BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4674.p (326 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300314069|ref|YP_003778161.1| amino acid ABC transporter perm... 595 e-171 gi|300312953|ref|YP_003777045.1| amino acid ABC transporter perm... 145 6e-36 gi|300313933|ref|YP_003778025.1| branched-chain amino acid ABC t... 138 6e-34 gi|300311771|ref|YP_003775863.1| branched-chain amino acid ABC t... 115 5e-27 gi|300311564|ref|YP_003775656.1| branched-chain amino acid ABC t... 103 2e-23 >gi|300314069|ref|YP_003778161.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 326 Score = 595 bits (1533), Expect = e-171, Method: Compositional matrix adjust. Identities = 313/326 (96%), Positives = 319/326 (97%) Query: 1 MNKKLGIAVLLILLLAAPFGIYPVFLMKMLCFALFACAFNLLIGYTGLLSFGHAAFLGWA 60 MNKK+GIAVLLILLLAAPFGIYPVFLMKMLCFALFACAFNLLIGYTGLLSFGHAAFLGWA Sbjct: 1 MNKKIGIAVLLILLLAAPFGIYPVFLMKMLCFALFACAFNLLIGYTGLLSFGHAAFLGWA 60 Query: 61 GYMCGQALKVWGLPTELGLVIGTLTGALIGLVMGLLAIRRQGIYFTMITLALAQMLFFVA 120 GYMCGQALKVWGLPTELGL+IGTLTGALIGLVMGLLAIRRQGIYFTMITLALAQMLFFVA Sbjct: 61 GYMCGQALKVWGLPTELGLIIGTLTGALIGLVMGLLAIRRQGIYFTMITLALAQMLFFVA 120 Query: 121 LQVPFTGGEDGLQGVPRGKLLGVLNLENDMTLYYVVLAIAVAGFALIVRTIHSPFGQVLK 180 LQ PFTGGEDGLQGVPRGKLLG LNLE+DMTLYYVVLAIAVAGFALIVRTIHSPFGQVLK Sbjct: 121 LQAPFTGGEDGLQGVPRGKLLGFLNLESDMTLYYVVLAIAVAGFALIVRTIHSPFGQVLK 180 Query: 181 AIKENEPRAISLGYDVARYKLLAFVLSAALSGLAGATKTLVLGFETLTDVHWSMSGLVVL 240 AIKENEPRAISLGYDVARYKLLAFVLSA LSGLAGATKTLVLGFETLTDVHWSMSGLVVL Sbjct: 181 AIKENEPRAISLGYDVARYKLLAFVLSAGLSGLAGATKTLVLGFETLTDVHWSMSGLVVL 240 Query: 241 MTLVGGLGTIVGPIVGAVIIIMLENKLGDIGTWLASTTNIDWFNTLGDSVTVVTGFIFIV 300 MTLVGGLGTI+GPIVGAVIIIMLENKLGDIG WLAS T+IDWFNTLGDSVT+VTGFIFIV Sbjct: 241 MTLVGGLGTILGPIVGAVIIIMLENKLGDIGAWLASVTHIDWFNTLGDSVTIVTGFIFIV 300 Query: 301 CVLAFRKGIVGEILALTRKGQAKSSH 326 CVLAFRKGIVGEILALTRKGQA SH Sbjct: 301 CVLAFRKGIVGEILALTRKGQASGSH 326 >gi|300312953|ref|YP_003777045.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 317 Score = 145 bits (365), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 91/224 (40%), Positives = 140/224 (62%), Gaps = 2/224 (0%) Query: 26 LMKMLCFALFACAFNLLIGYTGLLSFGHAAFLGWAGYMCGQALKVWGLPTELGLVIGTLT 85 L ++L FA+ A + N ++GY G++SFGHA F G Y+ A L ++ L Sbjct: 32 LTRILIFAMVAASLNFILGYGGMVSFGHAVFFGLGAYVTAIASFHGVTSAWLIWLLAALV 91 Query: 86 GALIGLVMGLLAIRRQGIYFTMITLALAQMLFFVALQVPFTGGEDGLQGVPRGKLLGV-L 144 AL+GLV+G++A+R + +YF MIT+ALAQ+ ++ + + GG+DGLQ R LLG L Sbjct: 92 TALVGLVIGVIALRTRAVYFIMITMALAQLFYYFFVGFRYYGGDDGLQVTAR-PLLGFGL 150 Query: 145 NLENDMTLYYVVLAIAVAGFALIVRTIHSPFGQVLKAIKENEPRAISLGYDVARYKLLAF 204 ++ D Y+VVLA A F L+ R + S FG L AI++NE RA ++GY RYKL AF Sbjct: 151 DMSGDNAFYWVVLAWLAASFILLQRLLASRFGLALNAIRQNERRAQAIGYPALRYKLAAF 210 Query: 205 VLSAALSGLAGATKTLVLGFETLTDVHWSMSGLVVLMTLVGGLG 248 V++A ++G+AG+ + F + +HWS SG++++M +GG+G Sbjct: 211 VIAAVIAGIAGSLIGMSNLFASPKLLHWSQSGILLVMVALGGVG 254 >gi|300313933|ref|YP_003778025.1| branched-chain amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 334 Score = 138 bits (348), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 98/254 (38%), Positives = 147/254 (57%), Gaps = 12/254 (4%) Query: 28 KMLCFALFACAFNLLIGYTGLLSFGHAAFLGWAGYMCGQALKVWGLPTELGLVIGTLTGA 87 ++L FAL A NLL+GYTGL+SFG F G Y G L L L + L GA Sbjct: 32 EVLVFALAALGCNLLLGYTGLMSFGQGIFFGVGSYTAGVVLLQLKLALLPALALAALGGA 91 Query: 88 LIGLVMGLLAIRRQGIYFTMITLALAQMLFFVALQVP-FTGGEDGLQGVPRGKL----LG 142 L+ L++G +IR++G YF M+TLA AQM +F+A + TGG++GL +PR L L Sbjct: 92 LVALLVGWFSIRQRGTYFVMLTLAFAQMFYFLAYTMKDVTGGDNGLLDIPRPPLALFGLT 151 Query: 143 VLNLENDMTLYYVVLAIAVAGFALIVRTIHSPFGQVLKAIKENEPRAISLGYDVARYKLL 202 +L + Y VV + V F L+ R + S G+ L A++ENE RA +LGYDV KL Sbjct: 152 LLPTTSSWQYYTVVAILFVLVFWLLQRVVDSVLGKTLLAVRENEARASALGYDVRLLKLA 211 Query: 203 AFVLSAALSGLAGATKTLVLGFETLTDVHWSMSGLVVLMTLVGGLGTIVGPIVGAVIIIM 262 AFV+S A++GLAG ++ G L+++ + S +++MT++GG G + ++GA ++ Sbjct: 212 AFVISGAVTGLAGGLHAMMTGVAPLSNIEYHTSEAILVMTVIGGTGNLFASVLGASFYVL 271 Query: 263 LENKLGDIGTWLAS 276 +G WL++ Sbjct: 272 -------VGNWLST 278 >gi|300311771|ref|YP_003775863.1| branched-chain amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 628 Score = 115 bits (288), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 83/250 (33%), Positives = 127/250 (50%), Gaps = 10/250 (4%) Query: 19 FGIYPVFLMKMLCFALFACAFNLLIGYTGLLSFGHAAFLGWAGYMCGQALKVWGLPTELG 78 F PV ++++L LFA + + L+G G++SFGHAA+ G Y P L Sbjct: 344 FPYLPVLMVEILVAVLFAASLHFLMGPGGMVSFGHAAYFGLGAYAAALVTLRLQWPMPLA 403 Query: 79 LVIGTLTGALIGLVMGLLAIRRQGIYFTMITLALAQMLFFVALQVP-FTGGEDGLQGVPR 137 ++ G T L L+ G +R G+Y M+TLA AQ+++ Q TGG +GL G Sbjct: 404 MLAGAGTAMLAALLFGWFCVRLSGVYLAMLTLAFAQIVWAAIYQWDDLTGGSNGLVG--- 460 Query: 138 GKLLGVLNLENDMTLYYVVLAIAVAGFALIVRTIHSPFGQVLKAIKENEPRAISLGYDVA 197 L L + + YY+ L + G L+ R IH+PFG L+A ++ RA +LG DV Sbjct: 461 --LRTAAALASPLAYYYLALLCSALGVYLLRRVIHAPFGLALRAARDASGRAQALGMDVR 518 Query: 198 RYKLLAFVLSAALSGLAGATKTLVLG--FETLTDVHWSMSGLVVLMTLVGGLGTIVGPIV 255 + F L+ GLAG G + V+ S+ GLV M L+GG+ ++ GP++ Sbjct: 519 ALQWGGFALAGLFCGLAGVLFAFSKGSISPEVAGVNRSVDGLV--MVLLGGVQSLAGPLL 576 Query: 256 GAVIIIMLEN 265 GA + L++ Sbjct: 577 GASVFTWLQD 586 >gi|300311564|ref|YP_003775656.1| branched-chain amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 404 Score = 103 bits (257), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 87/260 (33%), Positives = 133/260 (51%), Gaps = 23/260 (8%) Query: 12 ILLLAAPFGIYP-----VFLMKMLCFALFACAFNLLIGYTGLLSFGHAAFLGWAGY---- 62 ++LLAAP ++P L +M L ++N+L+G G+LSFGHA + G + Sbjct: 15 LVLLAAPL-VFPQSAALSLLSQMGTMVLLCLSYNMLLGEGGMLSFGHAVYSGLGAFGAIH 73 Query: 63 -MCGQALKVWGLPTELGLVIGTLTGALIGLVMGLLAIRRQGIYFTMITLALAQMLFFVAL 121 M A P L + G LTGAL G+++G L RR G F MITL L +++ L Sbjct: 74 LMNRMAEGALAFPMTLVPLAGGLTGALCGVLLGYLTTRRAGTTFAMITLGLVELVSACVL 133 Query: 122 QVPFT-GGEDGLQG--VPRGKLLGVLNLENDMTLYYVV----LAIAVAGFALIVRTIHSP 174 P GGE G+ G V +LG+ + + +YY++ L A+A +AL +P Sbjct: 134 MFPEVFGGEGGISGNRVIGEPVLGI-SYGPQIQVYYLIAGWLLVCAIAIWALRA----TP 188 Query: 175 FGQVLKAIKENEPRAISLGYDVARYKLLAFVLSAALSGLAGATKTLVLGFETLTDVHWSM 234 G++L A+++N RA +GYD R + LA +LSA +G++G + + V Sbjct: 189 LGRILNAVRDNPERAAFIGYDPQRVRYLALILSAFFAGVSGGLSAINFEIVSAEYVGALR 248 Query: 235 SGLVVLMTLVGGLGTIVGPI 254 SG ++L T +GG GPI Sbjct: 249 SGAILLFTFIGGSAYFYGPI 268 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.329 0.145 0.436 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 809,018 Number of extensions: 31240 Number of successful extensions: 222 Number of sequences better than 1.0e-08: 23 Number of HSP's gapped: 206 Number of HSP's successfully gapped: 23 Length of query: 326 Length of database: 1,619,870 Length adjustment: 85 Effective length of query: 241 Effective length of database: 1,217,395 Effective search space: 293392195 Effective search space used: 293392195 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 131 (55.1 bits)