BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4672.p
         (642 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300314067|ref|YP_003778159.1| glucose inhibited division GidA...  1282   0.0  

>gi|300314067|ref|YP_003778159.1| glucose inhibited division GidA
           protein [Herbaspirillum seropedicae SmR1]
          Length = 642

 Score = 1282 bits (3317), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 629/642 (97%), Positives = 635/642 (98%)

Query: 1   MLFPTQFDVIVVGGGHAGTEAALAAARMGQKTLLLTHNIETLGQMSCNPSIGGIGKGHLV 60
           MLFPTQFDVIVVGGGHAGTEAALAAARMGQKTLLLTHNIETLGQMSCNPSIGGIGKGHLV
Sbjct: 1   MLFPTQFDVIVVGGGHAGTEAALAAARMGQKTLLLTHNIETLGQMSCNPSIGGIGKGHLV 60

Query: 61  KEVDAMGGAMAIATDEAGIQFRILNSSKGPAVRATRAQADRILYKAAIRSRLENQPNLWL 120
           KEVDAMGGAMAIATDEAGIQFRILNSSKGPAVRATRAQADRILYKAAIRSRLENQPNLWL
Sbjct: 61  KEVDAMGGAMAIATDEAGIQFRILNSSKGPAVRATRAQADRILYKAAIRSRLENQPNLWL 120

Query: 121 FQQAVDDLMLEGDRVVGAITQAGIRFAGRAVVLTAGTFLDGKIHVGLNNYSGGRAGDPPA 180
           FQQAVDDLMLEGDRVVGA+TQAGIRFAGRAVVLTAGTFLDGKIHVGLNNYSGGRAGDPPA
Sbjct: 121 FQQAVDDLMLEGDRVVGAVTQAGIRFAGRAVVLTAGTFLDGKIHVGLNNYSGGRAGDPPA 180

Query: 181 VSLSARLKELKLPQGRLKTGTPPRIDGRTINLAILEEQPGDLDPVPVFSVMGNAAMHPRQ 240
           VSLSARLKELKLPQGRLKTGTPPRIDGR+INLAILEEQPGDLDPVPVFSVMGNAAMHPRQ
Sbjct: 181 VSLSARLKELKLPQGRLKTGTPPRIDGRSINLAILEEQPGDLDPVPVFSVMGNAAMHPRQ 240

Query: 241 MPCWITHTNSRTHDIIRGGLDRSPMYTGVIEGVGPRYCPSIEDKIHRFASKDSHQIYLEP 300
           MPCWITHTNSRTHDIIRGGLDRSPMYTGVIEGVGPRYCPSIEDKIHRFASKDSHQIYLEP
Sbjct: 241 MPCWITHTNSRTHDIIRGGLDRSPMYTGVIEGVGPRYCPSIEDKIHRFASKDSHQIYLEP 300

Query: 301 EGLTTHEFYPNGISTSLPFDVQLELVRSMKGMENAHILRPGYAIEYDYYDPRGLKSSLET 360
           EGLTTHEFYPNGISTSLPFDVQLELVRSMKGMENAHILRPGYAIEYDYYDPRGLKSSLET
Sbjct: 301 EGLTTHEFYPNGISTSLPFDVQLELVRSMKGMENAHILRPGYAIEYDYYDPRGLKSSLET 360

Query: 361 RQVQGLFFAGQINGTTGYEEAAAQGMLAGINAALQTQGREAWTPRRDEAYLGVLVDDLVT 420
           RQVQGLFFAGQINGTTGYEEAAAQGMLAGINAALQTQGREAWTPRRDEAYLGVLVDDLVT
Sbjct: 361 RQVQGLFFAGQINGTTGYEEAAAQGMLAGINAALQTQGREAWTPRRDEAYLGVLVDDLVT 420

Query: 421 QGVQEPYRMFTSRAEYRLSLREDNADLRLTEIGRELGCVGDAQWEAFDRKREAVSREMER 480
           QGVQEPYRMFTSRAEYRLSLREDNADLRLTEIGRELGCVGDAQWEAFDRKREAVSREMER
Sbjct: 421 QGVQEPYRMFTSRAEYRLSLREDNADLRLTEIGRELGCVGDAQWEAFDRKREAVSREMER 480

Query: 481 LKSTWVNPRILAAAEAERVLGKAIEREYNLLDLLRRPNVSYDSLMGLTGAEGQSLAGPGI 540
           LKSTWVNPRILAAAEAERVLGKAIEREYNLLDLLRRPNVSYDSLMGLTG EGQ+LAGPGI
Sbjct: 481 LKSTWVNPRILAAAEAERVLGKAIEREYNLLDLLRRPNVSYDSLMGLTGTEGQALAGPGI 540

Query: 541 EDGPVREQVEIQVKYAGYIARQANEISRQDHNENLKLPADLDYMEVKALSIEVRQKLNKH 600
           EDGPVREQVEIQVKYAGYIARQA+EISRQDHNENLKLPADLDYM+VKALSIEVRQKLNKH
Sbjct: 541 EDGPVREQVEIQVKYAGYIARQADEISRQDHNENLKLPADLDYMDVKALSIEVRQKLNKH 600

Query: 601 RPETLGQASRISGVTPAALSLLLVHLKKGVLKQPASAGNQAA 642
           RPETLGQASRISGVTPAALSLLLVHLKKG LK   +  NQAA
Sbjct: 601 RPETLGQASRISGVTPAALSLLLVHLKKGGLKPATATDNQAA 642


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.135    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,984,343
Number of extensions: 87028
Number of successful extensions: 242
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 242
Number of HSP's successfully gapped: 1
Length of query: 642
Length of database: 1,619,870
Length adjustment: 91
Effective length of query: 551
Effective length of database: 1,188,985
Effective search space: 655130735
Effective search space used: 655130735
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 134 (56.2 bits)