BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4669.p
         (210 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300314064|ref|YP_003778156.1| threonine efflux protein [Herba...   332   2e-92
gi|300312440|ref|YP_003776532.1| threonine efflux protein [Herba...    87   1e-18

>gi|300314064|ref|YP_003778156.1| threonine efflux protein
           [Herbaspirillum seropedicae SmR1]
          Length = 210

 Score =  332 bits (850), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 190/210 (90%), Positives = 202/210 (96%)

Query: 1   MQEIFHALGITDIWKLIAGTMLFLLLPGPGTFCVLTCSAKGGLRGGFMAQAGLMLGDVVL 60
           MQ +FH+LGITDIW+LIA TM+FLLLPGPGTFCVLTC+AKGG+RGGF AQAGLMLGDVVL
Sbjct: 1   MQALFHSLGITDIWQLIAATMVFLLLPGPGTFCVLTCAAKGGVRGGFAAQAGLMLGDVVL 60

Query: 61  MFLAAAGVAALLHANPLLFHGMQYMGAAYLAYLGGRLLFARGEGGGTVVPFSNAAEFRRG 120
           MFLAAAGVAALLHANPLLFHG+QY+GAAYLAYLG RLLFARGEGGGTVVPFSNAAEFRRG
Sbjct: 61  MFLAAAGVAALLHANPLLFHGLQYLGAAYLAYLGARLLFARGEGGGTVVPFSNAAEFRRG 120

Query: 121 FLVTLFNPKAIVFYMAFFPLFLDRDTQQGALTFVTMGAVISCCTFLYGSFLIFVGNAAAR 180
           FLVTLFNPKAIVFYMAFFPLFLD  TQQGALTF+TMGAVISCCTFLYGS L+ VGNAAAR
Sbjct: 121 FLVTLFNPKAIVFYMAFFPLFLDPATQQGALTFITMGAVISCCTFLYGSVLVMVGNAAAR 180

Query: 181 RMARNRTIAKLASRAAGIFLIGFGIKLTTQ 210
           RMARNRTIA+LASRAAG+FLIGFGIKLTTQ
Sbjct: 181 RMARNRTIARLASRAAGVFLIGFGIKLTTQ 210


>gi|300312440|ref|YP_003776532.1| threonine efflux protein
           [Herbaspirillum seropedicae SmR1]
          Length = 208

 Score = 86.7 bits (213), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 69/208 (33%), Positives = 95/208 (45%), Gaps = 14/208 (6%)

Query: 10  ITDIWKLIAGTMLFLLLPGPGTFCVLTCSAKGGLRGGFMAQAGLMLGDVVLMFLAAAGVA 69
           + D+   +   M   L PGP    VLT     G + G +A AG   G V    LA  G A
Sbjct: 1   MPDLILFLLAAMTLTLAPGPDNLYVLTRGIAQGRKAGLVAAAGFCSGLVFHTLLAVLGFA 60

Query: 70  ALLHANPLLFHGMQYMGAAYLAYLGGRLL---------FARGEGGGTVVPFSNAAEFRRG 120
           AL+ A P  +H +QY GAAYLAYLG R L          A G+G    VP      + + 
Sbjct: 61  ALIKAYPPAYHALQYAGAAYLAYLGVRTLRSASAGLALAADGQGAAA-VPLRRI--YWQS 117

Query: 121 FLVTLFNPKAIVFYMAFFPLFLDRDTQQGALTFVTMGAVISCCTF-LYGSFLIFVGNAAA 179
            L  + NPK  +F++AF P F+ R+    AL  + +  V     F ++ +  +F G   A
Sbjct: 118 VLANMLNPKVTLFFIAFLPQFVQREAGHEALQMLVLALVFIVQAFAIFSAIALFSGAVGA 177

Query: 180 RRMARNRTIAKLASRAAGIFLIGFGIKL 207
               R      L +R AG   IG GI++
Sbjct: 178 YFRRRASASVHL-NRLAGCAFIGLGIRM 204


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.333    0.146    0.448 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 505,719
Number of extensions: 16584
Number of successful extensions: 64
Number of sequences better than 1.0e-08: 4
Number of HSP's gapped: 62
Number of HSP's successfully gapped: 4
Length of query: 210
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 129
Effective length of database: 1,236,335
Effective search space: 159487215
Effective search space used: 159487215
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 128 (53.9 bits)