BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4666.p (513 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300314061|ref|YP_003778153.1| periplasmic glucan biosynthesis... 1004 0.0 gi|300312745|ref|YP_003776837.1| periplasmic glucans biosynthesi... 464 e-132 gi|300313221|ref|YP_003777313.1| periplasmic glucans biosynthesi... 305 8e-84 >gi|300314061|ref|YP_003778153.1| periplasmic glucan biosynthesis protein [Herbaspirillum seropedicae SmR1] Length = 517 Score = 1004 bits (2596), Expect = 0.0, Method: Compositional matrix adjust. Identities = 482/512 (94%), Positives = 501/512 (97%) Query: 2 LSATLLAASVQAQSNQGFDLNQAVARAQTLAAKPYQKPVSNLSPTFAAMQFADYMKIQPK 61 LSA LLAAS QAQ++QGFDLNQAVARA+ LAAKPYQKPVSNLSPTFAAMQFADYMKIQPK Sbjct: 6 LSACLLAASAQAQTSQGFDLNQAVARAKDLAAKPYQKPVSNLSPTFAAMQFADYMKIQPK 65 Query: 62 SDKFEWRNQPTPFKLAFYHQGMQFNAPVVIHEIVDGRVQDVGYSTDRFDFGDLKLAREST 121 S+KFEWR+Q TPFKLAFYHQGMQFNAPV IHEI+DGRVQDVGYSTDRF+FGDL LA++ST Sbjct: 66 SEKFEWRDQKTPFKLAFYHQGMQFNAPVAIHEIIDGRVQDVGYSTDRFNFGDLNLAKDST 125 Query: 122 AHLGYAGFRVVYPINRDDKEDEIMSVLGASYFRVIGKGQVYGLSARGLAIDTAMLSGEEF 181 AHLGYAGFRVVYPINRDDKEDE+MSVLGASYFRVIGKGQVYGLSARGLAIDTAM+SGEEF Sbjct: 126 AHLGYAGFRVVYPINRDDKEDEVMSVLGASYFRVIGKGQVYGLSARGLAIDTAMMSGEEF 185 Query: 182 PHFTEFWIQRPAPGEQQLTFYALLDSPRATGAYKFTLTPGKDALLDVQARVFLRGEVARL 241 PHFTEFWIQRPAPGE+QLTFYALLDSPRATGAYKFTLTPGKDALLDVQARVFLRGEV RL Sbjct: 186 PHFTEFWIQRPAPGEKQLTFYALLDSPRATGAYKFTLTPGKDALLDVQARVFLRGEVGRL 245 Query: 242 GIAPLTSMFLFGPNQQSSRRNFRPAIHDSNGLAIHTGSGEWLWRPLNDPQNVEVSSFEVT 301 GIAPLTSMFLFGPNQQSSRRNFRPAIHDSNGLAIHTG+GEWLWRPLNDPQNVEVSSFEV+ Sbjct: 246 GIAPLTSMFLFGPNQQSSRRNFRPAIHDSNGLAIHTGNGEWLWRPLNDPQNVEVSSFEVS 305 Query: 302 NPRGFGLLQRGRDFSDYEDLKDRYDLRPSAWIEPRGDWGKGAVQLVEIPTADETNDNIVA 361 NPRGFGLLQRGR+FS YEDLKDRYDLRPSAWIEP+GDWGKGAVQLVEIPTADETNDNIVA Sbjct: 306 NPRGFGLLQRGREFSAYEDLKDRYDLRPSAWIEPKGDWGKGAVQLVEIPTADETNDNIVA 365 Query: 362 YWLPAQLPARGTPVAYDYRIHWTMDEPAILNNEVGWVKQTFHTDGELTQANLIRAFDGTT 421 YWLPAQLPARGTP+AYDYRIHWTMDEPAILNNEVGWVKQTFHTDGELTQANLIRAFDGTT Sbjct: 366 YWLPAQLPARGTPLAYDYRIHWTMDEPAILNNEVGWVKQTFHTDGELTQANLIRAFDGTT 425 Query: 422 ALLVDFTGGPLGNLPAGTAVQPQVNVSNNGELIDAQLQPNPAINGWRLTLRVKIRNVAQA 481 ALLVDFTGGPLG LPAGT VQPQV+VSNNGELID QLQPNPAINGWRLTLRVKIRNVAQA Sbjct: 426 ALLVDFTGGPLGALPAGTPVQPQVSVSNNGELIDVQLQPNPAINGWRLTLRVKIRNVAQA 485 Query: 482 VELRAALTANGKPLTETWSYQLPPRSDVQRTF 513 VELRAAL+ANGKPLTETWSYQLPPRSDVQRTF Sbjct: 486 VELRAALSANGKPLTETWSYQLPPRSDVQRTF 517 >gi|300312745|ref|YP_003776837.1| periplasmic glucans biosynthesis G protein [Herbaspirillum seropedicae SmR1] Length = 541 Score = 464 bits (1195), Expect = e-132, Method: Compositional matrix adjust. Identities = 234/490 (47%), Positives = 312/490 (63%), Gaps = 7/490 (1%) Query: 19 FDLNQAVARAQTLAAKPYQKPVSNLSPTFAAMQFADYMKIQPKSDKFEWRNQPTPFKLAF 78 FD N ARA+ LA K Y+KP L + + + +I + DK WR Q PF+L+F Sbjct: 55 FDFNTVAARAKALAGKSYKKPADELPKSLKDLSYEQASQIYFRDDKSYWRAQKLPFELSF 114 Query: 79 YHQGMQFNAPVVIHEIVDGRVQDVGYSTDRFDFGDLK-LARESTAHLGYAGFRVVYPINR 137 H G + P+ ++E+V V+++ ++ FD+ + + S +LG+AGFRV +P+N Sbjct: 115 IHLGASYTEPIKVNEVVGDAVREIHFNPALFDYSATRSVDPRSLRNLGFAGFRVRFPVNS 174 Query: 138 DDKEDEIMSVLGASYFRVIGKGQVYGLSARGLAIDTAMLSGEEFPHFTEFWIQRPAPGEQ 197 +D++++ GASYFR +GKGQ YGLSARGLAIDTA+ SGEEFP FTEFW++RP+ + Sbjct: 175 AKVKDDVLTFHGASYFRALGKGQSYGLSARGLAIDTALYSGEEFPRFTEFWLERPSAESK 234 Query: 198 QLTFYALLDSPRATGAYKFTLTPGKDALLDVQARVFLRGEVARLGIAPLTSMFLFGPNQQ 257 +L YALLDSPRATGAY+F L PG D ++DV+A+++LR V +LGIAPLTSMFLFG NQ Sbjct: 235 ELVIYALLDSPRATGAYRFVLKPGADTVMDVKAQLYLRSNVTKLGIAPLTSMFLFGENQP 294 Query: 258 SSRRNFRPAIHDSNGLAIHTGSGEWLWRPLNDPQNVEVSSFEVTNPRGFGLLQRGRDFSD 317 +FRP +HDS+GLA+ +G+GEWLWRPL +P+ + V+SF NP GFGL+QR R FS Sbjct: 295 GPADDFRPEVHDSDGLAMQSGTGEWLWRPLVNPKRLLVTSFSFDNPLGFGLMQRDRSFSH 354 Query: 318 YEDLKDRYDLRPSAWIEPRGDWGKGAVQLVEIPTADETNDNIVAYWLPAQLPARGTPVAY 377 YEDL Y RPSAW+EP+G WG G V+LV+IPT DETNDNIVAYW+P LP G P Sbjct: 355 YEDLDYNYQARPSAWVEPKGKWGSGRVELVQIPTPDETNDNIVAYWIPNTLPKPGQPFNV 414 Query: 378 DYRIHWTMDEPAILNNEVGWVKQTFHTDGELTQANLIRAFDGTTALLVDFTGGPLGNLPA 437 +YR+ W D + +V QT G + D L +DF GG L LPA Sbjct: 415 EYRLSWQKDNEK--RPPLAYVTQTLFGHGYRPKQE--GKTDDVQQLSIDFDGGNLKKLPA 470 Query: 438 GTAVQPQVNVSNNGELIDAQLQPNPAINGWRLTLRVKIRNVAQAVELRAAL-TAN-GKPL 495 V+ V NG+L + N A GWR+ ++++ + VELR L AN G L Sbjct: 471 NARVEGVVEADANGKLASVTTRKNEATGGWRVEVKLRRTEENKPVELRGFLRNANGGTTL 530 Query: 496 TETWSYQLPP 505 +ETWSY LPP Sbjct: 531 SETWSYILPP 540 >gi|300313221|ref|YP_003777313.1| periplasmic glucans biosynthesis protein [Herbaspirillum seropedicae SmR1] Length = 544 Score = 305 bits (780), Expect = 8e-84, Method: Compositional matrix adjust. Identities = 189/520 (36%), Positives = 272/520 (52%), Gaps = 27/520 (5%) Query: 3 SATLLAASVQAQSNQGFDLNQAVARAQTLAAKPYQKPVSNLSPTFAAMQFADYMKIQPKS 62 S L A ++ + Q F Q + RA+ +A+ PYQ + + + + + KI+ K Sbjct: 28 SGALAAQGIETSAPQPFSFAQLIERARQMASTPYQPAAAAPAAILDRIDYDAHGKIRFKP 87 Query: 63 DKFEWRNQPTPFKLAFYHQGMQFNAPVVIHEIVDG--------RVQDVGYSTDRFDFGDL 114 D+ + P PF L F+H G F PV + +++G + +++ Y D FD Sbjct: 88 DRAAFATGPGPFPLTFFHLGKFFRVPVRMF-LLEGAGDATAPTQARELRYRDDYFDMPAD 146 Query: 115 KLARESTAHLGYAGFRVVYPI-----NRDDKEDEIMSVLGASYFRVIGKGQVYGLSARGL 169 A G+AGFR +D ++++ ++ LGASYFR IG YGLSARG+ Sbjct: 147 SPAHALPPGSGFAGFRFQESRLGDQQVKDWRKNDWVAFLGASYFRAIGDLYQYGLSARGV 206 Query: 170 AIDTAML-SGEEFPHFTEFWIQRPAPGEQQLTFYALLDSPRATGAYKFTLTPGKDALLDV 228 AID A+ EEFP FT+F+ + APG + YALLD P TGAY+F + G+ +++ Sbjct: 207 AIDVAVAGKSEEFPDFTQFFFEPGAPGSDTVVVYALLDGPSITGAYRFAMQRGQGVTMEI 266 Query: 229 QARVFLRGEVARLGIAPLTSMFLFGPNQQSSRRNFRPAIHDSNGLAIHTGSGEWLWRPLN 288 ++FLR +V RLG+AP TSM+ + + + ++RP +HDS+GLAI G+GE LWRPLN Sbjct: 267 DKQLFLRRDVERLGLAPATSMYWYSETVKGTGVDWRPEVHDSDGLAIWNGAGEHLWRPLN 326 Query: 289 DPQNVEVSSFEVTNPRGFGLLQRGRDFSDYEDLKDRYDLRPSAWIEPRGDWGKGAVQLVE 348 +P SSF PRGFGL+QR RDF Y D Y+ RPS W+EP GDWG+G VQL+E Sbjct: 327 NPPRTIASSFADRQPRGFGLMQRDRDFDHYLD-GVHYERRPSLWVEPLGDWGEGQVQLIE 385 Query: 349 IPTADETNDNIVAYWLPAQLPARGTPVAYDYRIHWTMDEPAILNNEVGWVKQTFHTDGEL 408 + T DE +DNIVA W+P G YR+HW + P + V G+ Sbjct: 386 LRTDDEIHDNIVAMWVPKAAARAGDRYQLRYRLHWQSETP-FPSALARCVATRLGRGGQP 444 Query: 409 TQAN--LIRAFDGTTALLVDFTGGPLGNLPAGTAVQPQVNVSNNG-ELIDAQLQPNPAIN 465 Q +R F +V+F G PL LP G + ++ S + + PN Sbjct: 445 GQPRPPQVRKF------MVEFKGPPLQALPFGVKPEAVISASRGSISYVYTEALPNGVPG 498 Query: 466 GWRLTLRVKIRNVAQAVELRAALTANGKPLTETWSYQLPP 505 WR + + VELR L G+ L+ETW +Q P Sbjct: 499 HWRAQFDLTAEG-EEPVELRLFLRHQGQALSETWLFQYHP 537 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.136 0.414 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,761,950 Number of extensions: 80047 Number of successful extensions: 181 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 173 Number of HSP's successfully gapped: 3 Length of query: 513 Length of database: 1,619,870 Length adjustment: 89 Effective length of query: 424 Effective length of database: 1,198,455 Effective search space: 508144920 Effective search space used: 508144920 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 133 (55.8 bits)