BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4665.p
         (785 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300314060|ref|YP_003778152.1| periplasmic beta-D-glucoside gl...  1508   0.0  

>gi|300314060|ref|YP_003778152.1| periplasmic beta-D-glucoside
           glucohydrolase [Herbaspirillum seropedicae SmR1]
          Length = 784

 Score = 1508 bits (3905), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 729/784 (92%), Positives = 762/784 (97%), Gaps = 3/784 (0%)

Query: 3   HQLTARQAAPVRRP-CTLALTLCALACSAALLAAAPAAQAQANPALLGNKSAFIDDLLRQ 61
           H+LT RQAAP RRP   LA+TLCALACSA L    P A AQANPALLG+K+AFIDDLLRQ
Sbjct: 3   HKLTKRQAAPTRRPRLALAVTLCALACSAVL--TGPTAHAQANPALLGDKTAFIDDLLRQ 60

Query: 62  MTLEEKIGQLRLISIGPEMPAKKLAEELAAGRVGGTFNSITRAENRPLQDGAMRSRLKIP 121
           MTLEEKIGQLRLISIGPEMPAKKLAEELAAGRVGGTFNS+TR ENRPLQDGAMRSRLKIP
Sbjct: 61  MTLEEKIGQLRLISIGPEMPAKKLAEELAAGRVGGTFNSVTRPENRPLQDGAMRSRLKIP 120

Query: 122 MFFAYDVIHGHRTTFPIGLGLASSWDMDLVAKAMRIAAEEAAADSIDMTFAPMVDISRDP 181
           MFFAYDVIHGHRTTFPIGLGLASSWDMD+VA+AMR++AEEAAADSIDMTFAPMVDISRDP
Sbjct: 121 MFFAYDVIHGHRTTFPIGLGLASSWDMDVVARAMRVSAEEAAADSIDMTFAPMVDISRDP 180

Query: 182 RWGRTSEGFGEDPYLVSRIAEVSVRALQGDTKPIAANRLMASVKHFALYGAVEGGRDYNV 241
           RWGRTSEGFGEDPYLVSRIAEVSVRALQGDTKPIAANR+MASVKHFALYGAVEGGRDYNV
Sbjct: 181 RWGRTSEGFGEDPYLVSRIAEVSVRALQGDTKPIAANRVMASVKHFALYGAVEGGRDYNV 240

Query: 242 VNMDPQRMYNDYLPPYRAAIDAGAGAVMVALNSINGTPATSNTWLLQDLLRRDWGFKGLT 301
           VNMDPQRMYNDYLPPYRAAIDAGAGAVMVALNSING PATSNTWLLQDLLRRDWGFKGLT
Sbjct: 241 VNMDPQRMYNDYLPPYRAAIDAGAGAVMVALNSINGAPATSNTWLLQDLLRRDWGFKGLT 300

Query: 302 VSDHGAITELVNHGVAQNDAQAARLAMQAGTDMSMADQVYIKQLPELVRSGKVPQQELDN 361
           VSDHGAITELVNHGVAQND++AARL+M+AGTDMSMADQVYIKQLPELVRSGKV QQELDN
Sbjct: 301 VSDHGAITELVNHGVAQNDSEAARLSMKAGTDMSMADQVYIKQLPELVRSGKVSQQELDN 360

Query: 362 AVRDILGAKYDLGLFKDPYVRIGRAADDPADVYADSRLHRREAREVAQQSMVLLENRNAT 421
           AVRDILGAKYDLGLFKDPYVRIGRAADDP DVYADSRLHRR+AREVAQQSMVLLENRNA 
Sbjct: 361 AVRDILGAKYDLGLFKDPYVRIGRAADDPPDVYADSRLHRRDAREVAQQSMVLLENRNAA 420

Query: 422 LPLKKTARIALVGPLADSHIDMLGSWSAAGRDKQTITLRQGLQAAVGGQGRLVYARGANI 481
           LPLKK ARIALVGPLADSHIDMLGSWSAAG+DKQTITLRQGLQAA+GGQG+LVYARGANI
Sbjct: 421 LPLKKNARIALVGPLADSHIDMLGSWSAAGKDKQTITLRQGLQAALGGQGKLVYARGANI 480

Query: 482 TDDKHIVDYLNFLNWDNPEVVQDKRSPQAMIDEAVRAARDADVIVAAVGESRGMSHESSS 541
           T+DKHIVDYLNFLNWD+PEVVQDKRSP+AMIDEAV+AAR ADVIVAAVGESRGMSHESSS
Sbjct: 481 TEDKHIVDYLNFLNWDDPEVVQDKRSPKAMIDEAVKAARHADVIVAAVGESRGMSHESSS 540

Query: 542 RTSLSLPQSQLDLLKALKATGKPLVLVLMNGRPLDLNWAHENASAILETWYTGTEGGNAI 601
           RTSLSLPQSQLDLLKALKATGKPLVLVLMNGRPLDLNWA ENASAILETWYTGTEGGNAI
Sbjct: 541 RTSLSLPQSQLDLLKALKATGKPLVLVLMNGRPLDLNWARENASAILETWYTGTEGGNAI 600

Query: 602 ADVLYGEVNPSGKLPITFPRSVGQIPSYYNHPRVGRPYTEGKPGNYTSQYFDEPNGPLYP 661
           AD+L+G+VNPSGKLPITFPRSVGQIPSYYNHPRVGRPYTEGKPGNYTSQYFDEPNGPLYP
Sbjct: 601 ADILFGDVNPSGKLPITFPRSVGQIPSYYNHPRVGRPYTEGKPGNYTSQYFDEPNGPLYP 660

Query: 662 FGYGLSYTEFKLSEVRLSQASMTADGKLQASVTVKNVGRRAGATVVQLYIRDVAASVVRP 721
           FGYGLSYTEFKLSEV LSQ SM+ADGK++ASVTVKNVGRRAGATVVQLY+RDVAASVVRP
Sbjct: 661 FGYGLSYTEFKLSEVSLSQPSMSADGKVEASVTVKNVGRRAGATVVQLYLRDVAASVVRP 720

Query: 722 VKELKDFRKLMLQPGEEQEVQFSIDRKALSFYNAKLEYVAEPGEFQVQIGLDSKDVKTAS 781
           VKELKDFRK+MLQPGEE++VQFSIDRKALSFYNAKLEYVAEPGEFQVQIGLDSK+VKTAS
Sbjct: 721 VKELKDFRKVMLQPGEEKQVQFSIDRKALSFYNAKLEYVAEPGEFQVQIGLDSKEVKTAS 780

Query: 782 FNLQ 785
           FNLQ
Sbjct: 781 FNLQ 784


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.133    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 2,268,019
Number of extensions: 94848
Number of successful extensions: 336
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 335
Number of HSP's successfully gapped: 1
Length of query: 785
Length of database: 1,619,870
Length adjustment: 93
Effective length of query: 692
Effective length of database: 1,179,515
Effective search space: 816224380
Effective search space used: 816224380
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 134 (56.2 bits)