BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4664.p (621 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300314059|ref|YP_003778151.1| multidrug ABC transporter ATPas... 1216 0.0 gi|300313154|ref|YP_003777246.1| Fe-S cluster assembly ABC trans... 259 3e-70 gi|300312733|ref|YP_003776825.1| multidrug ABC transporter ATPas... 243 4e-65 gi|300311488|ref|YP_003775580.1| multidrug ABC transporter ATPas... 231 1e-61 gi|300312189|ref|YP_003776281.1| bacteriocin/lantibiotic (cyclol... 229 6e-61 >gi|300314059|ref|YP_003778151.1| multidrug ABC transporter ATPase/permease [Herbaspirillum seropedicae SmR1] Length = 618 Score = 1216 bits (3145), Expect = 0.0, Method: Compositional matrix adjust. Identities = 587/613 (95%), Positives = 604/613 (98%) Query: 1 MFSWFEKLVHPYPETHPLPPPRGFMRFIWFCTKGVRPYIAAMTLMTAIIGVFEALLFAAL 60 MFSWFEKLV PYPE HPLPPPRGFMRFIWFCTKGVRPYIAAMTLMTAIIGVFEALLFAAL Sbjct: 1 MFSWFEKLVQPYPEHHPLPPPRGFMRFIWFCTKGVRPYIAAMTLMTAIIGVFEALLFAAL 60 Query: 61 GRIVDWLAKVQPSQLWAQEGHTLVWLVVILAASPLLIALQTLYKHQTLAGNFPMLLRWNF 120 GRIVDWLAK+ PSQLW+QEGHTL WLV+ILAASPLLIALQT+YKHQTLAGNFPMLLRWNF Sbjct: 61 GRIVDWLAKIAPSQLWSQEGHTLTWLVLILAASPLLIALQTMYKHQTLAGNFPMLLRWNF 120 Query: 121 HRLMLSQSMSFYQNEFAGRVATKVMQSALAVRDFCMIVGDILVFITIYFATLVGVVGSFD 180 HRLMLSQSMSFYQNEFAGRVATKVMQ+ALAVRDFCMIVGDILVFITIYFATL+GVVGSFD Sbjct: 121 HRLMLSQSMSFYQNEFAGRVATKVMQTALAVRDFCMIVGDILVFITIYFATLIGVVGSFD 180 Query: 181 MWMLAPFFIWLAAFAVAMRYFVPRLSAVARNQADARSLMTGRITDAYTNIATVKLFSHTG 240 +WMLAPFFIWLAAFAVA+RYFVPRLSAVARNQADARSLMTGRITDAYTNIATVKLFSH G Sbjct: 181 IWMLAPFFIWLAAFAVALRYFVPRLSAVARNQADARSLMTGRITDAYTNIATVKLFSHAG 240 Query: 241 READYARSAMREFLTTVNRQMRLVSGFEVVNHMLNMVLIIGATGVSLYLWTQGKVGVGAV 300 READYARSAMREFL TVN+QMRLVSGFEVVNH+LNMVLIIGATGVSLYLWTQGKVGVGAV Sbjct: 241 READYARSAMREFLVTVNQQMRLVSGFEVVNHLLNMVLIIGATGVSLYLWTQGKVGVGAV 300 Query: 301 AASTAMALRLNGIAHWVMWEMSSLFEHVGTVQDGINTLARAHDVKDAPDAKPLQVRQGEL 360 AASTAMALRLNGIAHWVMWEMSSLFEHVGTVQDGINTLARAHDVKDAPDA+PL+V QGEL Sbjct: 301 AASTAMALRLNGIAHWVMWEMSSLFEHVGTVQDGINTLARAHDVKDAPDAQPLKVSQGEL 360 Query: 361 RFEGVSFSYGGAAPRPVVDQLDLVIRPGEKIGLVGRSGAGKSTIVNLLLRFYDIEGGRIT 420 RFEGVSFSYGGAAPRPVVD+LDLVIRPGEKIGLVGRSGAGKSTIVNLLLRFYDIEGGRIT Sbjct: 361 RFEGVSFSYGGAAPRPVVDKLDLVIRPGEKIGLVGRSGAGKSTIVNLLLRFYDIEGGRIT 420 Query: 421 IDGQDIAHVTQDSLRAQIGMVTQDTSLLHRSVRENVIYGRPEASDAEMIHAAQRAEAHDF 480 IDGQDIAHVTQDSLRAQIGMVTQDTSLLHRSVREN+ YGRP+ASDAEM HAA+RAEAHDF Sbjct: 421 IDGQDIAHVTQDSLRAQIGMVTQDTSLLHRSVRENITYGRPDASDAEMTHAAERAEAHDF 480 Query: 481 IGTLADAKGRTGYDAHVGERGVKLSGGQRQRIAIARVMLKDAPILLLDEATSALDSEVEA 540 IGTLADAKGRTGYDAHVGERGVKLSGGQRQRIAIARVMLKDAPILLLDEATSALDSEVEA Sbjct: 481 IGTLADAKGRTGYDAHVGERGVKLSGGQRQRIAIARVMLKDAPILLLDEATSALDSEVEA 540 Query: 541 AIQTSLYKLMEGKTVVAIAHRLSTIAAMDRLIVLDQGRIVEQGTHAELLAANGLYARLWS 600 AIQTSLYKLMEGKTVVAIAHRLSTIAAMDRLIVLDQGRIVEQG+HAELLAANGLYARLWS Sbjct: 541 AIQTSLYKLMEGKTVVAIAHRLSTIAAMDRLIVLDQGRIVEQGSHAELLAANGLYARLWS 600 Query: 601 HQSGGFLGEEEED 613 HQSGGFLGEEEED Sbjct: 601 HQSGGFLGEEEED 613 >gi|300313154|ref|YP_003777246.1| Fe-S cluster assembly ABC transporter permease/ATPase [Herbaspirillum seropedicae SmR1] Length = 634 Score = 259 bits (663), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 159/402 (39%), Positives = 229/402 (56%), Gaps = 23/402 (5%) Query: 211 NQADARSLMTGRITDAYTNIATVKLFSHTGREAD-YARSAMREFLTTVNRQMRLVSGFEV 269 N+ D+ + R D+ N TVK F + EA Y R V Q S + Sbjct: 215 NELDSHA--NTRAIDSLLNYETVKYFGNEEFEARRYDEGLQRYERAAVKSQ----SSLSL 268 Query: 270 VNHMLNMVLIIGATGVSLYLW------TQGKVGVGAVAASTAMALRLNGIAHWVMWEMSS 323 +N + ++ A V+L LW G + +G + A ++L +++ Sbjct: 269 LNTGQSAII---AIAVTLILWRATVGVIDGSMTLGDMVLVNAFMIQLYIPLNFLGVLYRE 325 Query: 324 LFEHVGTVQDGINTLARAHDVKDAPDAKPLQVRQGELRFEGVSFSYGGAAPRPVVDQLDL 383 + + + ++ + L +V D+ DAKPL+ + L F+ V FSY R ++ +D Sbjct: 326 IKQSLADMERLFSLLEEHREVADSADAKPLKTQGANLHFDHVDFSY--ERNRQILFDVDF 383 Query: 384 VIRPGEKIGLVGRSGAGKSTIVNLLLRFYDIEGGRITIDGQDIAHVTQDSLRAQIGMVTQ 443 ++ G +VG SG+GKST+ LL RFYD++ G I IDGQD+ VTQ SLR IG+V Q Sbjct: 384 TVQAGTTTAVVGHSGSGKSTLSRLLYRFYDVDAGAIRIDGQDLRTVTQASLRQAIGIVPQ 443 Query: 444 DTSLLHRSVRENVIYGRPEASDAEMIHAAQRAEAHDFIGTLADAKGRTGYDAHVGERGVK 503 DT L + ++ N+ YG+P A+ +++ AA+ A HDFI +L D GY + VGERG+K Sbjct: 444 DTVLFNDTIEYNIAYGKPGATREQIVAAAKAAYIHDFIESLPD-----GYASMVGERGLK 498 Query: 504 LSGGQRQRIAIARVMLKDAPILLLDEATSALDSEVEAAIQTSLYKLMEGKTVVAIAHRLS 563 LSGG++QR+AIAR +LKD IL+ DEATSALDS E AIQ L ++ +T + IAHRLS Sbjct: 499 LSGGEKQRVAIARTLLKDPAILIFDEATSALDSRAEQAIQQQLEEIARERTTLVIAHRLS 558 Query: 564 TIAAMDRLIVLDQGRIVEQGTHAELLAANGLYARLWSHQSGG 605 TI +++VLD GRIVE+GTHA LL A GLYA++W Q G Sbjct: 559 TIVNAQQILVLDHGRIVERGTHAGLLMAGGLYAQMWLRQQAG 600 >gi|300312733|ref|YP_003776825.1| multidrug ABC transporter ATPase/permease [Herbaspirillum seropedicae SmR1] Length = 614 Score = 243 bits (620), Expect = 4e-65, Method: Compositional matrix adjust. Identities = 191/518 (36%), Positives = 280/518 (54%), Gaps = 64/518 (12%) Query: 116 LRWNFHRLMLSQSMSFYQNEFAGRVATKVMQS------------ALAVRDFCMIVG--DI 161 LR + +++QS F++ G V +++ ++A+R+ + +G + Sbjct: 126 LRSAVYAHVVTQSPEFFETTKTGEVLSRLTTDTTLIQTLVGTSISMALRNALLFIGGMSM 185 Query: 162 LVFITIYFATLVGVVGSFDMWMLAPFFIWLAAFAVAMRYF---VPRLSAVARNQADARSL 218 L F + +++ + LAA + + ++ V +LS ++++ S Sbjct: 186 LFFTSARLTSII--------------IVMLAAVVLPIVFYGRRVRKLSRASQDRVADASA 231 Query: 219 MTGRITDAYTNIATVKLFSHTGREAD-YARSAMREFLTTVNRQMRLVSGFEVVNHMLNMV 277 M G I +A + TV+ F+H EA +A+S R F T + R +R S VV ++ Sbjct: 232 MAGEILNA---MPTVQAFTHEEIEARRFAQSVERAFGTAMER-VRARSLLTVVA----IL 283 Query: 278 LIIGATGVSLYLWTQGKVGVGAVAASTAMALRLNGI---AHWVMWEMSSLFEHVGTVQDG 334 L+ GA + LW +G AV + L A V + +L E +G Q Sbjct: 284 LVFGA--IVFVLW----LGAHAVMEGSMSGGELGQFILYASLVAGSLGALSEVMGDTQRA 337 Query: 335 INTLARAHDVKDA---------PDAKPLQVRQGE-LRFEGVSFSYGGAAPRPVVDQLDLV 384 R D+ A P+ P + G L +GV F Y P + QL L Sbjct: 338 AGATERLLDLLAAHSPVQSVLLPEKLPPRTANGAALTVQGVDFHYPSRPGHPSLTQLSLT 397 Query: 385 IRPGEKIGLVGRSGAGKSTIVNLLLRFYDIEGGRITIDGQDIAHVTQDSLRAQIGMVTQD 444 ++PGE + +VG SGAGK+T+ LLLRFYD + G+I +DG DI ++ +LR IG+V QD Sbjct: 398 VQPGETVAIVGPSGAGKTTLFQLLLRFYDPQQGQILLDGVDIRYLDLQALRGAIGIVPQD 457 Query: 445 TSLLHRSVRENVIYGRPEASDAEMIHAAQRAEAHDFIGTLADAKGRTGYDAHVGERGVKL 504 T + + EN+ +GRPEASDAE+I AAQ A AH+FI L + Y +GERGV+L Sbjct: 458 TVIFSANAMENIRFGRPEASDAEVIAAAQMAAAHEFIERLPGS-----YACFLGERGVRL 512 Query: 505 SGGQRQRIAIARVMLKDAPILLLDEATSALDSEVEAAIQTSLYKLMEGKTVVAIAHRLST 564 SGGQRQRIAIAR +LK+ P+LLLDEATSALD+E E +Q +L M G+T + IAHRL+T Sbjct: 513 SGGQRQRIAIARALLKNPPLLLLDEATSALDAESERLVQGALEAAMVGRTTLVIAHRLAT 572 Query: 565 IAAMDRLIVLDQGRIVEQGTHAELLAANGLYARLWSHQ 602 + DR+IVL+ GRIVE GTHAEL+A +GLYA L + Q Sbjct: 573 VQRADRIIVLEHGRIVESGTHAELVARDGLYAGLAALQ 610 >gi|300311488|ref|YP_003775580.1| multidrug ABC transporter ATPase/permease [Herbaspirillum seropedicae SmR1] Length = 758 Score = 231 bits (588), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 154/394 (39%), Positives = 214/394 (54%), Gaps = 22/394 (5%) Query: 217 SLMTGRITDAYTNIATVKLFSHTGREADYARSAMREFLTTVNRQMRLVSGFEVVNHMLNM 276 S +T + D I VK F+ RE R A R L +R ++ S F L Sbjct: 362 SEVTNVLADTIPGIRVVKAFAQEKREVARFREANRHNLMVNDRVNKIWSLFTPTVTFLTE 421 Query: 277 VLIIGATGVSLYLWTQGKVGVGAVAASTAMALRLNGIAHWVMWEMSSLFEHVGTVQDGIN 336 V ++ ++ + ++ VG + A A R + S+ V Q Sbjct: 422 VGLLVVWVFGIWQVSSNQITVGVLTAFLAYISRFYT-------RLDSMSRIVSVTQKAAA 474 Query: 337 TLARAHDVKDAPDAKP-------LQVRQGELRFEGVSFSYGGAAPRPVVDQLDLVIRPGE 389 R D+ D + P L+ QG + + F YG R V+ + L I PGE Sbjct: 475 GAKRIFDILDHVSSVPEPANPVHLEKVQGAIEVRNIGFRYGN---RAVIRNMSLSIAPGE 531 Query: 390 KIGLVGRSGAGKSTIVNLLLRFYDIEGGRITIDGQDIAHVTQDSLRAQIGMVTQDTSLLH 449 IGLVG SG+GKST+VNL+ RFYD+ G I IDG DI + R IG+V Q+ L Sbjct: 532 MIGLVGHSGSGKSTMVNLICRFYDVSEGAIRIDGVDIRSLPISEYRRNIGLVLQEPFLFF 591 Query: 450 RSVRENVIYGRPEASDAEMIHAAQRAEAHDFIGTLADAKGRTGYDAHVGERGVKLSGGQR 509 ++ EN+ YG+PEA+ E+I AA+ A AH+FI L GYD+ VGERG LSGG+R Sbjct: 592 GTIAENIAYGKPEATREEIIAAARAAHAHEFILRLPQ-----GYDSLVGERGQALSGGER 646 Query: 510 QRIAIARVMLKDAPILLLDEATSALDSEVEAAIQTSLYKLMEGKTVVAIAHRLSTIAAMD 569 QRI+IAR +L D IL+LDEATS++D+ E IQ +L L++G+T +AIAHRLST+ D Sbjct: 647 QRISIARALLIDPRILILDEATSSVDTTTEKEIQKALDNLVQGRTTIAIAHRLSTLRKAD 706 Query: 570 RLIVLDQGRIVEQGTHAELLAANGLYARLWSHQS 603 RL+VLD+G++VE G H EL+A G Y +L+ Q+ Sbjct: 707 RLVVLDRGQVVEVGNHEELMAREGHYYKLYQAQA 740 >gi|300312189|ref|YP_003776281.1| bacteriocin/lantibiotic (cyclolysin-type) secretion ABC transporter protein [Herbaspirillum seropedicae SmR1] Length = 726 Score = 229 bits (583), Expect = 6e-61, Method: Compositional matrix adjust. Identities = 172/499 (34%), Positives = 262/499 (52%), Gaps = 44/499 (8%) Query: 124 MLSQSMSFYQNEFAGRVATKVMQSALAVRDFCM-----IVGDILVFITIYFATLVGVVGS 178 +LS +S++Q AG +V + +R F +V DI+ F ++ ++ S Sbjct: 244 LLSLPLSYFQVRRAGDSIARVRELE-NIRSFLTGNAMTLVLDIM-FSFVFLGVMLWYSVS 301 Query: 179 FDMWMLAPFFIWLAAFAVAMRYFVPRLSAVARNQADARSLMTGRITDAYTNIATVKLFSH 238 + +LA +++ V RL+ A+ +S + + T + TVK + Sbjct: 302 LSLIVLASIPVYVLLSLVFTPLLRERLNDKFNKSAENQSFLV----ETLTGMDTVKAMAV 357 Query: 239 TGREADYARSAMREF----LTTVNRQMRLVSGFEVVNHMLNMVLIIGATGVSLYLWTQGK 294 R + + LTT N + L SG +++ ++ +G + L + + Sbjct: 358 EPRWQQKWDKQLAAYVAAGLTTTNISL-LASG---AVGLVSKLVTVGIMWLGALLVVKNE 413 Query: 295 VGVGAVAASTAMALRLNGIAHWVMWEMSSL---FEHVGTVQDGINTLARAHDVKDAP--- 348 + VG + A +A G + ++ L F+ +G +++R DV DA Sbjct: 414 MSVGELVAFNMLA----GQVASPILRLAQLWNDFQQIGI------SMSRLADVLDARTEV 463 Query: 349 --DAKPLQVRQGELRFEGVSFSYGGAAPRPVVDQLDLVIRPGEKIGLVGRSGAGKSTIVN 406 + L G + F+ VSF Y P V+ L L IRPGE IG+VGRSG+GKST+ Sbjct: 464 AGNRTRLPRVNGAISFDLVSFRYRPETPE-VIRGLSLQIRPGEVIGIVGRSGSGKSTLAK 522 Query: 407 LLLRFYDIEGGRITIDGQDIAHVTQDSLRAQIGMVTQDTSLLHRSVRENVIYGRPEASDA 466 L+ R Y E GRI++DGQDIA + SLR QIG+V Q+ +L RS+R+N+ P Sbjct: 523 LVQRLYICETGRISVDGQDIAIIDTASLRQQIGVVLQENTLFSRSIRDNIALADPSTPIE 582 Query: 467 EMIHAAQRAEAHDFIGTLADAKGRTGYDAHVGERGVKLSGGQRQRIAIARVMLKDAPILL 526 ++I AA+ A AHDFI L + GYD VGE+G LSGGQRQRIAIAR ++ + IL+ Sbjct: 583 QIIEAAKLAGAHDFICELPE-----GYDTMVGEQGSGLSGGQRQRIAIARALITNPGILI 637 Query: 527 LDEATSALDSEVEAAIQTSLYKLMEGKTVVAIAHRLSTIAAMDRLIVLDQGRIVEQGTHA 586 DEATSALD E E IQ ++ ++ G+TV+ IAHRLS + DR+IV+++GR+ E G+H Sbjct: 638 FDEATSALDYESEKIIQDNMRQICAGRTVLIIAHRLSAVRDADRIIVMERGRVAESGSHD 697 Query: 587 ELLA-ANGLYARLWSHQSG 604 EL+ G+YA L Q+G Sbjct: 698 ELIDLPGGIYAHLHRLQAG 716 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.325 0.137 0.412 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,890,928 Number of extensions: 80974 Number of successful extensions: 767 Number of sequences better than 1.0e-08: 122 Number of HSP's gapped: 622 Number of HSP's successfully gapped: 134 Length of query: 621 Length of database: 1,619,870 Length adjustment: 91 Effective length of query: 530 Effective length of database: 1,188,985 Effective search space: 630162050 Effective search space used: 630162050 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 133 (55.8 bits)