BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4663.p (564 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300314057|ref|YP_003778149.1| methyl-accepting chemotaxis pro... 863 0.0 gi|300311614|ref|YP_003775706.1| methyl-accepting chemotaxis tra... 364 e-102 gi|300309796|ref|YP_003773888.1| methyl-accepting chemotaxis pro... 359 e-100 gi|300309873|ref|YP_003773965.1| methyl-accepting chemotaxis tra... 353 2e-98 gi|300310789|ref|YP_003774881.1| methyl-accepting chemotaxis tra... 345 5e-96 >gi|300314057|ref|YP_003778149.1| methyl-accepting chemotaxis protein I [Herbaspirillum seropedicae SmR1] Length = 554 Score = 863 bits (2231), Expect = 0.0, Method: Compositional matrix adjust. Identities = 458/564 (81%), Positives = 495/564 (87%), Gaps = 10/564 (1%) Query: 1 MNPLTPKRRSLSVAARLALSFALVLAMLLVLTVVSISKVNAIEGSLKRVSEDNSVKQRYA 60 M P K SLSVA RLALSFALVLAM+LVLTVVSIS+VNAI SL VS+DN+VKQRYA Sbjct: 1 MKPAADKPASLSVATRLALSFALVLAMMLVLTVVSISRVNAINDSLTTVSDDNNVKQRYA 60 Query: 61 INFRGSVHDRAIALRDLTLVSDPEVKDVVALIDKLDADYQQSAKPLDHIFATMQVNAEER 120 INFRGSVHDRAIALRDLTLV D E+KDV ALI KLDADYQ+SAK LD +FA MQV EER Sbjct: 61 INFRGSVHDRAIALRDLTLVGDTELKDVSALISKLDADYQRSAKLLDEMFAGMQVRPEER 120 Query: 121 ASLERIKAIEARTMPLAAKTIAARQAGDLDGARQLLLTQVKPAFVEWLAAINHLIDLEEH 180 ASL+ IKA+EAR MPLAAK IAAR +GD++GARQL+L+Q KPAFV+WLAAINH ID+EE Sbjct: 121 ASLDSIKAVEARAMPLAAKVIAARSSGDVEGARQLMLSQAKPAFVDWLAAINHFIDMEES 180 Query: 181 MSQAESAKARGNAHGFQAFMLVLLGVALVAGVVLATLITRAIRGALGAEPDEVKEVALAV 240 MSQAESAKAR A F+AFMLVLL ALVAG VLA LITR+IRGALGAEPDEVKE+ALAV Sbjct: 181 MSQAESAKARTVAREFKAFMLVLLAAALVAGTVLAMLITRSIRGALGAEPDEVKELALAV 240 Query: 241 DRGELYHAVALPAGGAGQRQSIMAVLSEMSGNLRGTVTRVRDAAAGVATISAQIAAGNSD 300 DRGELYHA ALP G + +SIMA LSEMSGNLR TVTRVRDAA GVATIS+QIAAGN D Sbjct: 241 DRGELYHAAALPLAGKTRARSIMATLSEMSGNLRHTVTRVRDAADGVATISSQIAAGNRD 300 Query: 301 LSARTEDQASSLQETASAMEQLTATVKQNDGHARQANQLAHNASEIARQGGAIVDQVVDT 360 L+ARTEDQA+SL+ETASAMEQLTATVKQND HARQANQLAHNASEIARQGGAIVD VVDT Sbjct: 301 LAARTEDQAASLEETASAMEQLTATVKQNDNHARQANQLAHNASEIARQGGAIVDNVVDT 360 Query: 361 MSAINTSSRKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRNLAQRS 420 M+AIN SSRKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRNLAQRS Sbjct: 361 MAAINVSSRKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRNLAQRS 420 Query: 421 AAAAKEIKQLIDASVGNVDSGTRLVEQAGQTMEQIVASVQQVTDVMGEISAASHEQSLGI 480 AAAAKE+KQLID SV NV++GT LVEQAGQTMEQIVASVQQVTDVMGEIS+ASHEQSLGI Sbjct: 421 AAAAKEVKQLIDDSVQNVENGTHLVEQAGQTMEQIVASVQQVTDVMGEISSASHEQSLGI 480 Query: 481 EEVNKAIALMDQVTQHNAALVEQASAAVATLQEQAVSLNQAVGVFQLEAPQEGAVVVTST 540 EEV+KAIALMDQVTQHNAALVEQASAAVATLQEQAV+LNQAVGVFQLE P + Sbjct: 481 EEVHKAIALMDQVTQHNAALVEQASAAVATLQEQAVNLNQAVGVFQLERPDQ-------- 532 Query: 541 APVLQTVQVPTQVAPALEMARRAA 564 +P L+T+ V + APAL M RAA Sbjct: 533 SPTLRTINV--KAAPALAMDARAA 554 >gi|300311614|ref|YP_003775706.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 581 Score = 364 bits (935), Expect = e-102, Method: Compositional matrix adjust. Identities = 256/540 (47%), Positives = 346/540 (64%), Gaps = 22/540 (4%) Query: 9 RSLSVAARLALSFALVLAMLLVLTVVSISKVNAIEGSLKRVSEDNSVKQRYAINFRGSVH 68 ++L VA RLA FA ++A+L V++V + K+N I ++ ++ D +K R+A + R V+ Sbjct: 6 KNLKVAVRLAAVFAFIVALLAVVSVTAFIKINNINRAIDQIVNDRYLKVRWAFDLRDGVN 65 Query: 69 DRAIALRDLTL--VSDPEVKDVVALIDKLDADYQQSAKPLDHIFATMQVNAEERASLERI 126 ++ LR + + + P + A +L+ +Q+ + LD I A QV A ++ Sbjct: 66 EQIKYLRGIAIDIENRPANEKRFA---QLEVAVKQTKEALDKITAR-QVTA---VGQKKA 118 Query: 127 KAI-EARTMPLAAKT--IAARQAGDLDGARQLLLTQVKPAFVEWLAAINHLIDLEEHMSQ 183 KA+ EAR A+K +A +AG+ A + +L ++ +LA D ++ Q Sbjct: 119 KALDEARIAFDASKADFLALVKAGNSTSADEYVLRKITDTQNNYLALARAFADSQDAQLQ 178 Query: 184 AESAKARGNAHGFQAFMLVLLGVALVAGVVLATLITRAIRGALGAEPDEVKEVALAVDRG 243 AE AKA + L A++A ++L L+ R+I L E VA V G Sbjct: 179 AEGAKAVADGAMAIEVTLACSMAAVLAAIILGYLMARSIVKPL----TEAVRVAENVAAG 234 Query: 244 ELYHAVALPAGGAGQRQSIMAVLSEMSGNLRGTVTRVRDAAAGVATISAQIAAGNSDLSA 303 +L + + +M L +M+ NL V+ VR + T S +IA+GN DLSA Sbjct: 235 DL--TTRIEPHSRDETGQLMQALRKMNDNLIEIVSGVRRGTESITTASGEIASGNLDLSA 292 Query: 304 RTEDQASSLQETASAMEQLTATVKQNDGHARQANQLAHNASEIARQGGAIVDQVVDTMSA 363 RTE QA SL+ETASAME++T+TV+QN +ARQANQ+A +ASEIA QGG IV +VV TM Sbjct: 293 RTEQQAGSLEETASAMEEMTSTVRQNADNARQANQMAVSASEIALQGGQIVGRVVHTMDE 352 Query: 364 INTSSRKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRNLAQRSAAA 423 IN SSRKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVR+LAQRSAAA Sbjct: 353 INQSSRKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSAAA 412 Query: 424 AKEIKQLIDASVGNVDSGTRLVEQAGQTMEQIVASVQQVTDVMGEISAASHEQSLGIEEV 483 AKEIK LI SVG V+ G+ LV QAG TMEQ+V+SV+ VTD++ EISAAS EQS GIEE+ Sbjct: 413 AKEIKALIADSVGKVEGGSALVAQAGATMEQVVSSVRSVTDIVAEISAASAEQSSGIEEI 472 Query: 484 NKAIALMDQVTQHNAALVEQASAAVATLQEQAVSLNQAVGVFQLEAPQEGAVVVTSTAPV 543 N+A+ MD+ TQ NAALVEQA+AA ++QEQAV L Q++ +F+LE +GA + + APV Sbjct: 473 NRAVTQMDEGTQQNAALVEQAAAAAKSMQEQAVRLTQSISIFKLE---QGAASIPA-APV 528 >gi|300309796|ref|YP_003773888.1| methyl-accepting chemotaxis protein [Herbaspirillum seropedicae SmR1] Length = 563 Score = 359 bits (921), Expect = e-100, Method: Compositional matrix adjust. Identities = 246/531 (46%), Positives = 341/531 (64%), Gaps = 15/531 (2%) Query: 8 RRSLSVAARLALSFALVLAMLLVLTVVSISKVNAIEGSLKRVSEDNSVKQRYAINFRGSV 67 + + + RL L FA V+ +L+++T I ++ ++G V E + + +V Sbjct: 2 KSGMKMGTRLGLGFAWVVLLLVLVTGFGIFNMHQVQGRFTHVVEVKNPESALVKEMLETV 61 Query: 68 HDRAIALRDLTLVSDPEVKDVVA-LIDKLDADYQQSAKPLDHIFA-TMQVNAEERASLER 125 +R+I+LR+L L + PE D+ A I+ Y+ +A+ L +FA + + EE+A+L + Sbjct: 62 GERSISLRNLMLPAAPEDVDIEAQYIEAQSLKYKMAAQKLQQLFAESSDTSDEEKAALPK 121 Query: 126 IKAIEARTMPLAAKTI---AARQAGDLDGARQLLLTQVKPAFVEWLAAINHLIDLEEHMS 182 I A ++ L + + R+A +L Q L Q P W + L LE+ ++ Sbjct: 122 IAAQASKAEKLINEAVEFGKRREAYEL---AQFLKEQYLPVQKSWQVELKALAALEDQLN 178 Query: 183 QAESAKARGNAHGFQAFMLVLL--GVALVAGVVLATLITRAIRGALGAEPDEVKEVALAV 240 + E+A+A A+ +A ML+LL + +V V+ A +TR + LG EPD ++A + Sbjct: 179 K-EAAEASAVAYS-RARMLMLLISAIGVVTAVLAAFWLTRHLLRKLGGEPDYAVQIAGQI 236 Query: 241 DRGELYHAVALPAGGAGQRQSIMAVLSEMSGNLRGTVTRVRDAAAGVATISAQIAAGNSD 300 G+L AV + AG S+MA + M L V VR + + T S++IA GN D Sbjct: 237 AEGDL--AVVIDTR-AGDHDSLMAAMRVMRDKLAAIVAEVRKGSETITTASSEIARGNLD 293 Query: 301 LSARTEDQASSLQETASAMEQLTATVKQNDGHARQANQLAHNASEIARQGGAIVDQVVDT 360 LS RTE QA +L+ETAS+MEQL +TVKQN +A QAN LA AS++A QGG+IV QVV T Sbjct: 294 LSGRTEQQAGALEETASSMEQLNSTVKQNAENAHQANDLALAASDVAVQGGSIVSQVVQT 353 Query: 361 MSAINTSSRKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRNLAQRS 420 M +IN SS+K+ DI+ VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVR+LAQRS Sbjct: 354 MQSINASSQKVADIVSVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRS 413 Query: 421 AAAAKEIKQLIDASVGNVDSGTRLVEQAGQTMEQIVASVQQVTDVMGEISAASHEQSLGI 480 A+AAKEIK LI SVG V++G++LVEQAG TM IV S+++VTDVM EI+ A+ EQS GI Sbjct: 414 ASAAKEIKVLIGDSVGKVENGSKLVEQAGSTMHDIVTSIRRVTDVMTEINHANREQSSGI 473 Query: 481 EEVNKAIALMDQVTQHNAALVEQASAAVATLQEQAVSLNQAVGVFQLEAPQ 531 E+VN+AI +D +TQ NAALVEQA+AA +LQEQA L Q V VF+L+A Q Sbjct: 474 EQVNEAIIQIDDMTQQNAALVEQAAAAARSLQEQAAGLQQLVSVFRLDAAQ 524 >gi|300309873|ref|YP_003773965.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 547 Score = 353 bits (906), Expect = 2e-98, Method: Compositional matrix adjust. Identities = 227/523 (43%), Positives = 324/523 (61%), Gaps = 11/523 (2%) Query: 10 SLSVAARLALSFALVLAMLLVLTVVSISKVNAIEGSLKRVSEDNSVKQRYAINFRGSVHD 69 +L V RLAL F L+L LL ++ + + + + +L +++ N+ + + R ++ Sbjct: 3 NLKVVTRLALGFGLILVFLLSISALGLYGMARVNDALTDITDVNNAEIKLVTALRNALSQ 62 Query: 70 RAIALRDLTLV---SDPEVKD-VVALIDKLDADYQQSAKPLDHIFATMQVNAE-ERASLE 124 RA+A+R++ L+ +D +V+ +A +KL AD + LD +F T E ER L Sbjct: 63 RALAIRNIALLDEQADMQVESQTLARQEKLYAD---AYAALDKMFTTEAATTERERQLLV 119 Query: 125 RIKAIEARTMPLAAKTIAARQAGDLDGARQLLLTQVKPAFVEWLAAINHLIDLEEHMSQA 184 +IK EA T+PL AK + A ++L+TQV+P W+ ++ L + E+ ++ Sbjct: 120 QIKNDEAATLPLMAKAVQLGLENKAAEAGKMLITQVRPKQQAWIKSLTELAEFEDQLNDE 179 Query: 185 ESAKARGNAHGFQAFMLVLLGVALVAGVVLATLITRAIRGALGAEPDEVKEVALAVDRGE 244 + AR + + AL+ GV + LI R+I LGAEP E + VA + G+ Sbjct: 180 AATSARNTYAWLRMVTVAAALAALLVGVAASALIARSILRQLGAEPSEAQAVARDIASGD 239 Query: 245 LYHAVALPAGGAGQRQSIMAVLSEMSGNLRGTVTRVRDAAAGVATISAQIAAGNSDLSAR 304 L V + G + S+MA + +M L ++ AA ++ S QIA GN DLS R Sbjct: 240 LTATVRVREGDSS---SLMASIEQMRYQLNVIAHGIKSAAETISVASGQIAQGNFDLSQR 296 Query: 305 TEDQASSLQETASAMEQLTATVKQNDGHARQANQLAHNASEIARQGGAIVDQVVDTMSAI 364 TE+QA+SL+ETA++ME+LT TV+QN HA +A +L+ A+E A G D+VV TM I Sbjct: 297 TEEQAASLEETAASMEELTTTVRQNTQHASEALRLSGGATETAAAGSQAFDRVVQTMDRI 356 Query: 365 NTSSRKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRNLAQRSAAAA 424 SS K+ DII VI+GIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVR+LAQRSA AA Sbjct: 357 TASSSKMSDIISVIEGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAVAA 416 Query: 425 KEIKQLIDASVGNVDSGTRLVEQAGQTMEQIVASVQQVTDVMGEISAASHEQSLGIEEVN 484 KEIK+LI S+ +V +G++LV AGQ M QIVASVQ+ ++M I+ A+ EQ GIE++N Sbjct: 417 KEIKELIGESMSHVGAGSQLVSDAGQQMAQIVASVQRFGEIMNNIATATQEQGSGIEQIN 476 Query: 485 KAIALMDQVTQHNAALVEQASAAVATLQEQAVSLNQAVGVFQL 527 A+ MDQVTQ NAALVE+ASAA +L +QA L + V VF++ Sbjct: 477 TAMVQMDQVTQQNAALVEEASAAAQSLSQQASGLLKVVSVFKI 519 >gi|300310789|ref|YP_003774881.1| methyl-accepting chemotaxis transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 542 Score = 345 bits (885), Expect = 5e-96, Method: Compositional matrix adjust. Identities = 220/522 (42%), Positives = 333/522 (63%), Gaps = 5/522 (0%) Query: 11 LSVAARLALSFALVLAMLLVLTVVSISKVNAIEGSLKRVSEDNSVKQRYAINFRGSVHDR 70 L V+ RLAL FA V+ +L+V+++V + + ++G+L + +N + A SV R Sbjct: 4 LKVSTRLALGFASVVVLLVVISLVGLWGMATVKGNLSDIVANNQ-QGGLADVMNNSVRIR 62 Query: 71 AIALRDLTLVSDPE-VKDVVALIDKLDADYQQSAKPLDHIFATMQVNAEERASLERIKAI 129 A+A+R++ L +P + + I + YQ + + L +F E + I Sbjct: 63 ALAIRNIALFQEPALIAREIERIKVQEKAYQDAREKLGKMFDQPDTTRREHELFDLIAQN 122 Query: 130 EARTMPLAAKTIAARQAGDLDGARQLLLTQVKPAFVEWLAAINHLIDLEEHMSQAESAKA 189 A T PL + + Q LL +++P +WL ++ L E+ ++ SA A Sbjct: 123 AADTEPLMNQAVTLAQQDKSAELISLLTQKIRPVQAKWLDNLDELGRFEDELNNQASAAA 182 Query: 190 RGNAHGFQAFMLVLLGVALVAGVVLATLITRAIRGALGAEPDEVKEVALAVDRGELYHAV 249 L+ +++ V A LI R++ LG EP + +E+A + +G L AV Sbjct: 183 DTTYRSILTTTWTLVAGSVLLAVAAAFLIVRSVLHQLGGEPAQAQELAAQIAQGNL--AV 240 Query: 250 ALPAGGAGQRQSIMAVLSEMSGNLRGTVTRVRDAAAGVATISAQIAAGNSDLSARTEDQA 309 ++P G + S+MA L M L V ++ +A ++T ++QIA GN DLS RTE+QA Sbjct: 241 SIPLA-KGDQHSLMASLENMRAQLTRIVDGIKHSAESISTAASQIAVGNLDLSRRTEEQA 299 Query: 310 SSLQETASAMEQLTATVKQNDGHARQANQLAHNASEIARQGGAIVDQVVDTMSAINTSSR 369 +SL+ETAS+ME++T+TV+QN +A Q +QLA +AS A++GG +V++VV TM I+ S+ Sbjct: 300 ASLEETASSMEEITSTVEQNTQNAGQGHQLARSASLHAQKGGEVVERVVGTMKDISQSAY 359 Query: 370 KIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRNLAQRSAAAAKEIKQ 429 KI +II ++GIAFQTNILALNAAVEAARAGEQGRGFAVVATEVR+LAQRSA++AKEI+ Sbjct: 360 KITEIIATVEGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSASSAKEIRG 419 Query: 430 LIDASVGNVDSGTRLVEQAGQTMEQIVASVQQVTDVMGEISAASHEQSLGIEEVNKAIAL 489 LI++SV +V++G +LV++AG TM+++V S+QQV D+M EI+AAS+EQS GI ++N AI+ Sbjct: 420 LIESSVQHVEAGQKLVDEAGLTMDEVVRSIQQVNDLMSEITAASNEQSSGISQINIAISQ 479 Query: 490 MDQVTQHNAALVEQASAAVATLQEQAVSLNQAVGVFQLEAPQ 531 MD+VTQ NAALVE++++A ++ +QA SL AV VF++E PQ Sbjct: 480 MDEVTQQNAALVEESASAAQSMAQQANSLRDAVAVFRIEQPQ 521 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.315 0.126 0.327 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,240,776 Number of extensions: 42747 Number of successful extensions: 633 Number of sequences better than 1.0e-08: 70 Number of HSP's gapped: 328 Number of HSP's successfully gapped: 71 Length of query: 564 Length of database: 1,619,870 Length adjustment: 90 Effective length of query: 474 Effective length of database: 1,193,720 Effective search space: 565823280 Effective search space used: 565823280 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 133 (55.8 bits)