BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4661.p
         (282 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300314055|ref|YP_003778147.1| branched-chain amino acid amino...   534   e-153
gi|300310002|ref|YP_003774094.1| branched-chain amino acid amino...    91   9e-20

>gi|300314055|ref|YP_003778147.1| branched-chain amino acid
           aminotransferase/4-amino-4-deoxychorismate lyase
           [Herbaspirillum seropedicae SmR1]
          Length = 282

 Score =  534 bits (1375), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 258/282 (91%), Positives = 270/282 (95%)

Query: 1   MNDPIVYLNGEFTPLSEARVPVLDRGFIFGDGIYEVIPMYRRKAFRGQQHLARLFRSLAS 60
           MN+ IVYLNGE TPLSEARVPVLDRGFIFGDGIYEVIPMY RKAFRG+QHLARLFRSLA 
Sbjct: 1   MNEAIVYLNGELTPLSEARVPVLDRGFIFGDGIYEVIPMYGRKAFRGKQHLARLFRSLAG 60

Query: 61  IGIPNPHDQAGWNALIDQVVQANGLEDQMIYLQVTRGVAKRAHAFPKEVVPTVLIMTNPM 120
           IGIPNPHD+AGW  LIDQVVQANGL+DQMIYLQVTRGVAKRAHAFPKEVVPTVLIMTNPM
Sbjct: 61  IGIPNPHDEAGWMDLIDQVVQANGLQDQMIYLQVTRGVAKRAHAFPKEVVPTVLIMTNPM 120

Query: 121 ALPPASAIEQGVACVTMEDRRWLNCQIKSTSLLGNVLAAQFAAENQVTEAIQFRDGFLSE 180
           ALP A+ +E+GVACVTMEDRRWLNCQIKSTSLLGNVLAAQFAAEN+VTEAIQFRDGFLSE
Sbjct: 121 ALPSAAMLEKGVACVTMEDRRWLNCQIKSTSLLGNVLAAQFAAENEVTEAIQFRDGFLSE 180

Query: 181 ASSSNVWVVKDGKISAPPKDNLILEGIRYGLMEELCAEQGIVLESRRIPREEVLAADELI 240
           AS+SNVWVVKDGKISAPPKDNLILEGIRYGLMEELCAEQGI LESRRI REEVLAADEL+
Sbjct: 181 ASASNVWVVKDGKISAPPKDNLILEGIRYGLMEELCAEQGIALESRRITREEVLAADELM 240

Query: 241 ISSASKEVLPVVKLDGQPVGSGQPGPVFGKVYAAYQAAKARL 282
           ISSASKEVLPVV LDGQPVGSG+PGPVF +VYAAYQAAKARL
Sbjct: 241 ISSASKEVLPVVTLDGQPVGSGRPGPVFARVYAAYQAAKARL 282


>gi|300310002|ref|YP_003774094.1| branched-chain amino acid
           aminotransferase [Herbaspirillum seropedicae SmR1]
          Length = 307

 Score = 90.9 bits (224), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 76/279 (27%), Positives = 126/279 (45%), Gaps = 11/279 (3%)

Query: 3   DPIVYLNGEFTPLSEARVPVLDRGFIFGDGIYEVIPMYRR----KAFRGQQHLARLFRSL 58
           D  ++ +GE     +A V VL     +G G++E +  Y+       FR Q+H  RL  S 
Sbjct: 8   DGKIWKDGELIDWRDATVHVLTHTLHYGMGVFEGVRAYKTPDGTAIFRLQEHTRRLRNSA 67

Query: 59  ASIGIPNPHDQAGWNALIDQVVQANGLEDQMIYLQVTRGVAKRAHAFPKEVVPTVLIMTN 118
               +  P+D         QVV+ N LE   I   +  G  K   +     +   +   +
Sbjct: 68  KIFQMEVPYDHDTLAQAQRQVVRENQLESCYIRPLIWIGSEKLGVSAKGNQIHVAVAAWS 127

Query: 119 PMALPPASAIEQGVACVTME-DRRWLNCQIKSTSLLG----NVLAAQFAAENQVTEAIQF 173
             A      + +G+   T    R  +N  +      G    ++LA Q A  +   EA+  
Sbjct: 128 WGAYLGEDGLNKGIRVKTSSFSRHHVNVSLVRAKACGYYINSILANQEALADGYDEALLL 187

Query: 174 -RDGFLSEASSSNVWVVKDGKISAPPKDNLILEGIRYGLMEELCAEQGIVLESRRIPREE 232
             +G++SE S  NV++VK+GKI  P   +  L+GI    +  +  + GI +  +RI R+E
Sbjct: 188 DTEGYVSEGSGENVFIVKNGKIYTPDLASC-LDGITRDAVLTMARDLGIEVIEKRITRDE 246

Query: 233 VLAADELIISSASKEVLPVVKLDGQPVGSGQPGPVFGKV 271
           +  ADE   +  + E+ P+ +LD + +GSG  GPV  K+
Sbjct: 247 MYCADEAFFTGTAAEITPIRELDRRVIGSGARGPVTEKL 285


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.136    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 801,288
Number of extensions: 30952
Number of successful extensions: 85
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 82
Number of HSP's successfully gapped: 2
Length of query: 282
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 198
Effective length of database: 1,222,130
Effective search space: 241981740
Effective search space used: 241981740
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)