BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4652.p
         (195 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300314045|ref|YP_003778137.1| choline dehydrogenase [Herbaspi...   225   2e-60

>gi|300314045|ref|YP_003778137.1| choline dehydrogenase
           [Herbaspirillum seropedicae SmR1]
          Length = 543

 Score =  225 bits (573), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 121/189 (64%), Positives = 131/189 (69%), Gaps = 36/189 (19%)

Query: 6   VIVGGGSAGA----TLSGIGRPEDILPHGIALQHALPGVGQNLQDHLDFTQG-------- 53
           VI+  G+ G+     LSG+GR +DILPHGIAL H LPGVGQNLQDHLDFTQG        
Sbjct: 255 VIIAAGAFGSPQLLQLSGVGRSDDILPHGIALHHPLPGVGQNLQDHLDFTQGWTTRDTDN 314

Query: 54  ------------------------LIATPFAEGAAFLKTHAELERPDIQLHFCIAIVDDH 89
                                   LIATPFAEGAAFLKT  EL+RPDIQLHFCIAIVDDH
Sbjct: 315 FGLGVVGGLRLLGQLLPWKRHGEGLIATPFAEGAAFLKTRPELDRPDIQLHFCIAIVDDH 374

Query: 90  ARKLHAGYGFSLHMCMLRPHPRGRVGLQSADPLADPLIDAGYLSDPRDLLTMIAGANSSA 149
           ARKLHAGYGFSLHMCMLRPH RGRVGLQSADP+ADPLID GYLSDPRDL TMI GA  + 
Sbjct: 375 ARKLHAGYGFSLHMCMLRPHSRGRVGLQSADPMADPLIDPGYLSDPRDLATMIDGARMAR 434

Query: 150 ATTIWARIR 158
              +   +R
Sbjct: 435 QIVMTEPLR 443


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.324    0.140    0.476 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 755,911
Number of extensions: 33097
Number of successful extensions: 144
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 144
Number of HSP's successfully gapped: 2
Length of query: 195
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 115
Effective length of database: 1,241,070
Effective search space: 142723050
Effective search space used: 142723050
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 128 (53.9 bits)