BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4649.p (946 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300314042|ref|YP_003778134.1| signal transduction protein con... 1773 0.0 gi|300312904|ref|YP_003776996.1| diguanylate cyclase/phosphodies... 508 e-145 gi|300311871|ref|YP_003775963.1| EAL domain-containing protein [... 439 e-124 gi|300311453|ref|YP_003775545.1| signal transduction containing ... 403 e-113 gi|300312026|ref|YP_003776118.1| signal transduction protein con... 396 e-111 >gi|300314042|ref|YP_003778134.1| signal transduction protein containing a membrane domain, an EAL and a GGDEF domain-containing protein [Herbaspirillum seropedicae SmR1] Length = 948 Score = 1773 bits (4592), Expect = 0.0, Method: Compositional matrix adjust. Identities = 861/947 (90%), Positives = 904/947 (95%), Gaps = 2/947 (0%) Query: 1 MQRVINKLGATLSASLTLMLGLCATVTVFVATSHLEEDAVNLDFERRAGLRAFTIQRGLE 60 MQRVINKLGATLSASLTLMLGLCAT TVFVATSHLEEDAV+LDFERRAGLRAFTIQRGLE Sbjct: 1 MQRVINKLGATLSASLTLMLGLCATATVFVATSHLEEDAVSLDFERRAGLRAFTIQRGLE 60 Query: 61 EAVQVQSVVNHFYATVGDPSREQFDNFTRPLLERYPYVRAFSVQRFVSDEDRPVFEALRQ 120 EAVQVQSVVNHFYATVGDP+R+QF+NFTRPLLERYPYVRAFSVQRFVSDEDRPVFEALRQ Sbjct: 61 EAVQVQSVVNHFYATVGDPTRDQFENFTRPLLERYPYVRAFSVQRFVSDEDRPVFEALRQ 120 Query: 121 GVKPDFEITALQDG--QPQRAPQKPFYLVVDYLEPLAGNAAALGLDVSGNAAIMQALDAA 178 G +P F+ITAL +G +P APQ+P YLVVD++EP+ GN AALGLDVS NA IM AL AA Sbjct: 121 GARPGFQITALAEGKVEPVPAPQQPSYLVVDFIEPVPGNEAALGLDVSRNAEIMGALGAA 180 Query: 179 LASGYPASTPPIRLAQFGPEERGLLVIQPVYRGGVQPTDLAARRALLVGDTTAVLELDGL 238 LASG PASTPP+RLAQFGP+ERGLLVIQPVYRGGVQPTD ARRALLVGDT+AVLEL+GL Sbjct: 181 LASGRPASTPPLRLAQFGPDERGLLVIQPVYRGGVQPTDQLARRALLVGDTSAVLELNGL 240 Query: 239 VQKILDGAGLMSDHEIGLRIYVGPQATADKLVYRHDSVAQQSQWLDQIIKPGSFFRHPSN 298 V+KILD AGLM+DH+IGLRIYVG QA LVYRHDS Q++ WLD ++KPG+ FRHPS Sbjct: 241 VRKILDSAGLMADHDIGLRIYVGAQAEGRNLVYRHDSAPQEAHWLDHLLKPGTLFRHPST 300 Query: 299 TVTSFDIAGQRWHMEISIPPRSVFADHYGSLLILLVGVIASLLGAAYMRALSMRSHRVQQ 358 TV+SFDIAGQ WH+EIS+PPRS+FADHYGSLLILLVGVIASLLGAAYMRALSMRSHR+QQ Sbjct: 301 TVSSFDIAGQTWHLEISVPPRSLFADHYGSLLILLVGVIASLLGAAYMRALSMRSHRIQQ 360 Query: 359 LVEEKTAELRTTNALLSDDIKARRLAERALRLRHQAIEASANAILILSARQPDYTIEYVN 418 LVEE+TAELRTTNALLSDDIKARRLAERALRLRHQAIEASANAILILSA++PDYTIEYVN Sbjct: 361 LVEERTAELRTTNALLSDDIKARRLAERALRLRHQAIEASANAILILSAQEPDYTIEYVN 420 Query: 419 PAFARITGYSSAEAVGKSIRFLEGRDSDPDGFETVWIAMREQREHNVVLRNYHKDGSELW 478 PAFARITGYSS EAVGKSIRFLEGRDSDP+GFETVWIAMREQREHNVVLRNYHKDGSELW Sbjct: 421 PAFARITGYSSTEAVGKSIRFLEGRDSDPEGFETVWIAMREQREHNVVLRNYHKDGSELW 480 Query: 479 NDFYIAPVRDENGEVTHFVAALYDITSMKRYEAELEFQASRDTLTGLINRHMLRHHLEQA 538 NDFYIAPVRDE+GEVTHFVAALYDITSMKRYEAELEFQASRDTLTGLINRHMLRHHLEQA Sbjct: 481 NDFYIAPVRDESGEVTHFVAALYDITSMKRYEAELEFQASRDTLTGLINRHMLRHHLEQA 540 Query: 539 IGAAERQKQALWVVFVDLDRFKFVNDTLGHKAGDTLLRTVAGRLRAAVREADTVARLGGD 598 IG AERQKQALWVVFVDLDRFKFVNDTLGHKAGDTLLRTVAGRLRAAVREADTVARLGGD Sbjct: 541 IGVAERQKQALWVVFVDLDRFKFVNDTLGHKAGDTLLRTVAGRLRAAVREADTVARLGGD 600 Query: 599 EFIMILPEQDELTLDTRSLQRIMDAVAAPVTLGGHTLFMTCSIGVACYPNDGTDGETLIK 658 EFIMILPEQDELTLDTRSLQRIMDAVAAPVTLGGHTLFMTCS+GVACYPNDGTDGETLIK Sbjct: 601 EFIMILPEQDELTLDTRSLQRIMDAVAAPVTLGGHTLFMTCSVGVACYPNDGTDGETLIK 660 Query: 659 HADIAMYRGKQTGRNNFQFYTPAMNEQALERLRIEGDLRNALDHGEFLLHYQPKVDLASG 718 HADIAMYRGKQTGRNNFQFYTPAMNEQALERLRIEGDLRNALDHGEFLLHYQPKVDLASG Sbjct: 661 HADIAMYRGKQTGRNNFQFYTPAMNEQALERLRIEGDLRNALDHGEFLLHYQPKVDLASG 720 Query: 719 RVVGCEALIRWLHPQLGMVSPARFIGLAEETGLILPIGAWVLRTACTQCRQWQLAGHEDI 778 RV+G EALIRW HPQLGMVSPARFIGLAEETGLILPIGAWVLR ACTQCRQWQL G+ DI Sbjct: 721 RVIGSEALIRWQHPQLGMVSPARFIGLAEETGLILPIGAWVLRAACTQCRQWQLGGYADI 780 Query: 779 SVSVNLSVGQFLQKDLVSSIADVLADTGLPPASLEIELTESLMMTDVEHAIGILAGLKKL 838 SVSVNLSVGQFLQKDLVSSIADVL DTGLPP SLE+ELTESLMMTDVEHAIGILAGLKKL Sbjct: 781 SVSVNLSVGQFLQKDLVSSIADVLEDTGLPPESLELELTESLMMTDVEHAIGILAGLKKL 840 Query: 839 GIRLSIDDFGTGYSSLAYLKRFPIDVLKIDRSFVRDITIDADDAAITASIISLARHLKLR 898 G+RLSIDDFGTGYSSLAYLKRFPIDVLKIDRSFVRDITIDADDAAITASIISLARHLKLR Sbjct: 841 GVRLSIDDFGTGYSSLAYLKRFPIDVLKIDRSFVRDITIDADDAAITASIISLARHLKLR 900 Query: 899 VIAEGVETDEQLDYLRHYGCDEIQGYLFSPPVAPEKFEQMLREERAM 945 VIAEGVETDEQLDYLRHYGCDEIQGYLFSPPV +KFEQ+LR++R M Sbjct: 901 VIAEGVETDEQLDYLRHYGCDEIQGYLFSPPVPADKFEQILRQDRVM 947 >gi|300312904|ref|YP_003776996.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor domains protein [Herbaspirillum seropedicae SmR1] Length = 701 Score = 508 bits (1308), Expect = e-145, Method: Compositional matrix adjust. Identities = 286/573 (49%), Positives = 371/573 (64%), Gaps = 11/573 (1%) Query: 377 DIKARRLAERALR---LRHQAIEASANAILILSARQPDYTIEYVNPAFARITGYSSAEAV 433 D+ R+ A +AL+ R+++I NAI + PD T VNPA ARI GY S E + Sbjct: 123 DVTERKEAAQALQEAERRYRSI--FENAIEGVFQTTPDGTYIAVNPALARIYGYHSPEDL 180 Query: 434 GKSIRFLEGR-DSDPDGFETVWIAMREQRE-HNVVLRNYHKDGSELWNDFYIAPVRDENG 491 +R + + +P+ + M EQ N R Y +DG +W V DE G Sbjct: 181 IVGLRDISHQLYVEPERRQEFMRLMEEQGSVSNFESRVYRRDGEIIWISENARAVYDEAG 240 Query: 492 EVTHFVAALYDITSMKRYEAELEFQASRDTLTGLINRHMLRHHLEQAIGAAERQKQALWV 551 +++ + + IT K +EAE+ QA+ D LTGL NR+ML HL++A+ A RQK AL Sbjct: 241 KLSCYEGTVEAITERKAHEAEMRHQATHDALTGLPNRNMLHEHLQRALRVA-RQKGALTA 299 Query: 552 V-FVDLDRFKFVNDTLGHKAGDTLLRTVAGRLRAAVREADTVARLGGDEFIMILPEQDEL 610 V FVDLD+FKF+ND+LGH+ GD LL+TVA RL+A +READ VAR GGDEF+++L Q E Sbjct: 300 VAFVDLDQFKFINDSLGHQVGDELLKTVAQRLQACLREADMVARQGGDEFVLVLQNQTEG 359 Query: 611 TLD-TRSLQRIMDAVAAPVTLGGHTLFMTCSIGVACYPNDGTDGETLIKHADIAMYRGKQ 669 +QRI+ AVA P G +T SIGV+ YP DG D E+L+KHAD AMYR K+ Sbjct: 360 EAGIAEVMQRILAAVARPWQAGDREFQVTASIGVSRYPADGKDVESLLKHADSAMYRAKE 419 Query: 670 TGRNNFQFYTPAMNEQALERLRIEGDLRNALDHGEFLLHYQPKVDLASGRVVGCEALIRW 729 GRNNFQF+ P M+ Q RL + +LR ALD EF L+YQPK+ L GR++G EALIRW Sbjct: 420 QGRNNFQFFAPWMDSQVSNRLEMLINLRRALDQDEFKLYYQPKLSLQDGRLIGAEALIRW 479 Query: 730 LHPQLGMVSPARFIGLAEETGLILPIGAWVLRTACTQCRQWQLAGHEDISVSVNLSVGQF 789 PQ GMV P RFI AEE GLI+PIG WVLRTAC Q + WQ AG I V+VNLS Q Sbjct: 480 ESPQQGMVPPDRFIPFAEEAGLIVPIGEWVLRTACRQNQAWQQAGLPPIPVAVNLSPRQ- 538 Query: 790 LQKDLVSSIADVLADTGLPPASLEIELTESLMMTDVEHAIGILAGLKKLGIRLSIDDFGT 849 L + L +A VLA +GL + LE+E+TE+++M D E ++ L LK+LG+++S+DDFGT Sbjct: 539 LNQSLPDFVAGVLAQSGLAASWLELEITENVVMKDAEKSVATLHALKRLGLQISVDDFGT 598 Query: 850 GYSSLAYLKRFPIDVLKIDRSFVRDITIDADDAAITASIISLARHLKLRVIAEGVETDEQ 909 GYSSL+YL+RFP+D LKID+SFVRDI DAD AAI +IISLA L LRVIAEGVE +EQ Sbjct: 599 GYSSLSYLRRFPVDALKIDKSFVRDIVRDADSAAIVKAIISLAHILNLRVIAEGVEDEEQ 658 Query: 910 LDYLRHYGCDEIQGYLFSPPVAPEKFEQMLREE 942 +L+ CDE+QGY F P+ F + E+ Sbjct: 659 HAFLKENACDEVQGYYFGKPMEVAVFTAWMSEQ 691 >gi|300311871|ref|YP_003775963.1| EAL domain-containing protein [Herbaspirillum seropedicae SmR1] Length = 1036 Score = 439 bits (1129), Expect = e-124, Method: Compositional matrix adjust. Identities = 258/586 (44%), Positives = 350/586 (59%), Gaps = 37/586 (6%) Query: 375 SDDIKARRLAERALRLRHQAIEASANAILILSARQPDYTIEYVNPAFARITGYSSAEAVG 434 S DI R+ E LR+ A + S +LI A + I VN AF ITGYS+ E VG Sbjct: 461 SRDITDRKQIEAELRISAVAFD-SREGMLITDA---NSKILRVNKAFTEITGYSAEEIVG 516 Query: 435 KSIRFLEGRDSDPDGFETVWIAMREQREHNVVLRNYHKDGSELWN-----DFY-----IA 484 K L P F+ MRE +R + K E+W+ + Y I+ Sbjct: 517 KHPNLLRSDRHGPAFFQE----MRES------IRRFGKWQGEIWDRRKNGEVYPEWLTIS 566 Query: 485 PVRDENGEVTHFVAALYDITSMKRYEAELEFQASRDTLTGLINRHMLRHHLEQAIGAAER 544 V++++ +VTH+V+ +DI+ K E + A D LT L NR +L L+QAI + R Sbjct: 567 AVKNKDQQVTHYVSTHHDISDRKLAEERIRELAFFDALTRLPNRTLLLDRLKQAIALSLR 626 Query: 545 QKQALWVVFVDLDRFKFVNDTLGHKAGDTLLRTVAGRLRAAVREADTVARLGGDEFIMIL 604 K ++F+DLD FK +NDT+GH+ GDTLL+ VA RL A VRE DTVAR+GGDEF+++L Sbjct: 627 TKTCAALLFIDLDHFKTLNDTIGHEKGDTLLKQVAQRLLANVRENDTVARVGGDEFVVVL 686 Query: 605 PEQDELTLD----TRSL-QRIMDAVAAPVTLGGHTLFMTCSIGVACYPNDGTDGETLIKH 659 +EL + TR++ ++I+ A+ + L T SIG + + L+K Sbjct: 687 EGLNELQQEAATQTRAIGEKILTALGSTYQLDDVEYRTTASIGATVFLGRAASVDELMKQ 746 Query: 660 ADIAMYRGKQTGRNNFQFYTPAMNEQALERLRIEGDLRNALDHGEFLLHYQPKVDLASGR 719 AD+AMY+ K+TGRN +F+ PAM LER +E LR A+D + LLHYQP+V + GR Sbjct: 747 ADLAMYKAKETGRNALRFFDPAMQTAVLERATLEAGLRKAIDGNQLLLHYQPQV-VEGGR 805 Query: 720 VVGCEALIRWLHPQLGMVSPARFIGLAEETGLILPIGAWVLRTACTQCRQW----QLAGH 775 V G E L+RW HPQ GMV P FI LAEETGLIL +G WVL TAC Q W Q+A Sbjct: 806 VTGAEVLVRWQHPQRGMVPPGDFIPLAEETGLILSLGNWVLETACRQLATWAAQPQMA-- 863 Query: 776 EDISVSVNLSVGQFLQKDLVSSIADVLADTGLPPASLEIELTESLMMTDVEHAIGILAGL 835 D+S++VN+S Q + D V ++ D + TG P L++ELTESL++ +VE I + L Sbjct: 864 -DLSIAVNVSAPQLREPDFVQTVLDTIERTGANPRRLKLELTESLLVDNVEDIIQKMFAL 922 Query: 836 KKLGIRLSIDDFGTGYSSLAYLKRFPIDVLKIDRSFVRDITIDADDAAITASIISLARHL 895 K G+ S+DDFGTGYSSL+YLKR P++ LKID+SFVRD+ ID +DA+I +I++LA+ L Sbjct: 923 KAYGVEFSLDDFGTGYSSLSYLKRLPLNQLKIDQSFVRDVLIDPNDASIAKTIVNLAQSL 982 Query: 896 KLRVIAEGVETDEQLDYLRHYGCDEIQGYLFSPPVAPEKFEQMLRE 941 L VIAEGVETD Q +L GC QGY F PV E FE+ +E Sbjct: 983 GLGVIAEGVETDAQRSFLADAGCHAYQGYFFCRPVTVEAFEKFAQE 1028 >gi|300311453|ref|YP_003775545.1| signal transduction containing PAS/GGDEF/EAL domains protein [Herbaspirillum seropedicae SmR1] Length = 683 Score = 403 bits (1036), Expect = e-113, Method: Compositional matrix adjust. Identities = 228/539 (42%), Positives = 322/539 (59%), Gaps = 8/539 (1%) Query: 410 PDYTIEYVNPAFARITGYSSAEAVGKSIRFLEGRDSDPDGFETVWIAMREQREHNVVLRN 469 P I N ++ GYS+ EA+G+++ FL + + D +++ E + +R Sbjct: 140 PAGFITSWNRGAEQLFGYSAMEAIGRNVLFLYENEDEEDSLHDLFL---EHGGREMEVRR 196 Query: 470 YHKDGSELWNDFYIAPVRDENGEVTHFVAALYDITSMKRYEAELEFQASRDTLTGLINRH 529 K G W ++ +RD+NG + L DIT K E + A D LTGL NR Sbjct: 197 RKKSGEVFWASLSLSVMRDQNGHPIGLIGYLNDITERKNAEKLIHHLAYYDALTGLPNRT 256 Query: 530 MLRHHLEQAIGAAERQKQALWVVFVDLDRFKFVNDTLGHKAGDTLLRTVAGRLRAAVREA 589 +L ++QA+ A + V+F+DL+RFK +NDTLGH AGD LL VA RLR A+RE Sbjct: 257 LLTRTVDQALEEARHENLHGCVMFIDLNRFKPINDTLGHVAGDMLLVEVAMRLRRALREQ 316 Query: 590 DTVARLGGDEFIMILPEQDELTLDTRSLQRIMDAVAAPVTLGGHTLFMTCSIGVACYPND 649 D VARLG DEF + L D+ + Q+++ P + GH L + SIGV+ YP + Sbjct: 317 DVVARLGADEFAVALFGIDKDS-PAYVAQKLLALFDDPFFIDGHELRVGASIGVSLYPEN 375 Query: 650 GTDGETLIKHADIAMYRGKQTGRNN---FQFYTPAMNEQALERLRIEGDLRNALDHGEFL 706 TD ETL++ ADIAMYR KQ G NN + Y+ MN L+ LRIE L +A ++ E L Sbjct: 376 ATDTETLLRLADIAMYRAKQGGENNEGGYACYSEEMNRNTLDLLRIETGLLHAFEYNELL 435 Query: 707 LHYQPKVDLASGRVVGCEALIRWLHPQLGMVSPARFIGLAEETGLILPIGAWVLRTACTQ 766 L+YQPKVD+ + + G EAL+RW HP+ G++ P FI +AEETGLI+ + WVL C Q Sbjct: 436 LYYQPKVDMQTLAITGAEALVRWQHPERGLLLPGEFIPIAEETGLIVQLSDWVLDAVCRQ 495 Query: 767 CRQWQLAGHEDISVSVNLSVGQFLQKDLVSSIADVLADTGLPPASLEIELTESLMMTDVE 826 R W+ AG I +++N++ +F + L + L L LE+E+TES++M + Sbjct: 496 ARAWKDAGLPPIRIALNVTAREF-TRSLPDRVGAALERHMLSGEWLELEITESMLMHSTD 554 Query: 827 HAIGILAGLKKLGIRLSIDDFGTGYSSLAYLKRFPIDVLKIDRSFVRDITIDADDAAITA 886 I I+ + LGI +S+DDFGTGYSSL+YLKRFPI+ LKIDRSF I D +D AI + Sbjct: 555 RVISIMEKICGLGITVSLDDFGTGYSSLSYLKRFPINTLKIDRSFTMGIPDDTNDCAIAS 614 Query: 887 SIISLARHLKLRVIAEGVETDEQLDYLRHYGCDEIQGYLFSPPVAPEKFEQMLREERAM 945 +II +A+ L+ +VIAEGVE ++Q ++LR GC+E+QGY+FS PV F ML E R + Sbjct: 615 AIIGIAKQLRHKVIAEGVEDEKQFNFLREAGCNELQGYIFSRPVPAPDFHAMLLEGRKL 673 >gi|300312026|ref|YP_003776118.1| signal transduction protein containing a membrane domain, an EAL and a GGDEF domain-containing protein [Herbaspirillum seropedicae SmR1] Length = 1106 Score = 396 bits (1017), Expect = e-111, Method: Compositional matrix adjust. Identities = 195/436 (44%), Positives = 286/436 (65%), Gaps = 6/436 (1%) Query: 507 KRYEAELEFQASRDTLTGLINRHMLRHHLEQAIGAAERQKQALWVVFVDLDRFKFVNDTL 566 +R + + A D LTGL NR + H+ AI AE + + V+ +DLDRFK +NDT Sbjct: 660 RRADERIRHLAHYDELTGLPNRFLCTQHVSNAITHAEHRNGMVAVILMDLDRFKNINDTF 719 Query: 567 GHKAGDTLLRTVAGRLRAAVREADTVARLGGDEFIMILPEQDELTLDTRSLQRIMDAVAA 626 GH+ G+ +L+ +A R R ++RE D +AR+GGDEFI+++ + D+ Q+++ Sbjct: 720 GHETGEAVLQEIAQRFRNSLRELDILARVGGDEFIVLVDDFDDPVQLGEIAQKLLTEARK 779 Query: 627 PVTLGGHTLFMTCSIGVACYPNDGTDGETLIKHADIAMYRGKQTGRNNFQFYTPAMNEQA 686 P + G ++ SIG+A YP DG + +TLIK+ADIAMYR K G+++++F++ +N Sbjct: 780 PFIIDGQEAMLSVSIGIATYPGDGDNAQTLIKNADIAMYRAKHHGKDDYRFFSDEINTNT 839 Query: 687 LERLRIEGDLRNALDHGEFLLHYQPKVDLASGRVVGCEALIRWLHPQLGMVSPARFIGLA 746 +ER+ +E +LR A++ EF++HYQPK++LA GR+VG EAL+RW HP G++ P FI LA Sbjct: 840 VERIALEAELRRAIERAEFVVHYQPKIELAEGRIVGAEALVRWQHPLRGLLPPGEFITLA 899 Query: 747 EETGLILPIGAWVLRTACTQC---RQWQLAGHEDISVSVNLSVGQFLQKDLVSSIADVLA 803 EET LI IG VL AC RQ Q+ +S+NL+ QF + L+ I +V+ Sbjct: 900 EETRLIDQIGLLVLDVACRDIGLMRQQQMTCGR---ISINLTGSQFGDERLLDDIKEVVD 956 Query: 804 DTGLPPASLEIELTESLMMTDVEHAIGILAGLKKLGIRLSIDDFGTGYSSLAYLKRFPID 863 G PP+ LE E+TES++M + E AI I+ G++ G +SIDDFGTGYSSLAYLKRFP++ Sbjct: 957 RHGTPPSCLEFEITESMVMHNRERAIAIMDGIRAEGFTISIDDFGTGYSSLAYLKRFPVN 1016 Query: 864 VLKIDRSFVRDITIDADDAAITASIISLARHLKLRVIAEGVETDEQLDYLRHYGCDEIQG 923 LKID+SF+ DI + + +AI +II+++ L L+V+ EGVET++QL LR +G DE QG Sbjct: 1017 TLKIDKSFINDIPDNPNSSAIVQAIIAMSHALNLKVVTEGVETEKQLQALREFGSDEYQG 1076 Query: 924 YLFSPPVAPEKFEQML 939 Y FS PV +F Q+L Sbjct: 1077 YYFSKPVPYAQFVQLL 1092 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.322 0.137 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 2,914,553 Number of extensions: 124588 Number of successful extensions: 506 Number of sequences better than 1.0e-08: 47 Number of HSP's gapped: 434 Number of HSP's successfully gapped: 47 Length of query: 946 Length of database: 1,619,870 Length adjustment: 94 Effective length of query: 852 Effective length of database: 1,174,780 Effective search space: 1000912560 Effective search space used: 1000912560 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 135 (56.6 bits)