BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4648.p (626 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300314039|ref|YP_003778131.1| lipoprotein [Herbaspirillum ser... 919 0.0 gi|300310497|ref|YP_003774589.1| glycine/D-amino acid oxidase [H... 61 2e-10 >gi|300314039|ref|YP_003778131.1| lipoprotein [Herbaspirillum seropedicae SmR1] Length = 625 Score = 919 bits (2376), Expect = 0.0, Method: Compositional matrix adjust. Identities = 491/627 (78%), Positives = 527/627 (84%), Gaps = 3/627 (0%) Query: 1 MPARPLQLAGPELLAAWHAEADRLMPALNAVPDCLRQQHSATVLDLHFGLGHSFFATWHA 60 MPARPLQLA ELLAAW A+A + L PDCLR+Q +ATVLDLHF LG +FFATW A Sbjct: 1 MPARPLQLASSELLAAWRADAAQHQRVLALPPDCLREQQAATVLDLHFALGQNFFATWRA 60 Query: 61 FARQREQGQGGAQRLHYVAILPHPPAPQALHPDLTYAQALRAAWPLPLPGTHRLLLDEGR 120 F R GQGGAQRLHYVAILPHPPAP L DL+YAQALRAAWPLPLPGTHRLLLDEGR Sbjct: 61 FDELR--GQGGAQRLHYVAILPHPPAPHELIDDLSYAQALRAAWPLPLPGTHRLLLDEGR 118 Query: 121 LTLTLIWGALEEELARLDAPIDLFYLHAEAERFDPDASGWHAHACKRLARLAWTGAQALV 180 +TLTL+WGALEEELARL+AP+DLFYLHA A+ FDPDA W A ACKRLARLAWTGAQA+V Sbjct: 119 ITLTLVWGALEEELARLEAPVDLFYLHAHAQAFDPDAPAWQAPACKRLARLAWTGAQAVV 178 Query: 181 FGAAGQAPLAAAMRQVGFTGQERDGALALRYAPAWARPATHVATLDTPLQRDAQHPRHAL 240 G AG+ L AA+RQVGF GQ R+GAL LRYAP WARP +HVAT +TPL R Q RHA+ Sbjct: 179 LGGAGRDDLQAALRQVGFAGQSREGALHLRYAPGWARPPSHVATRETPLLRYPQANRHAI 238 Query: 241 VIGAGLAGTAAAERLSARGWRIELIDAGPQVATRASGNHGGLFMPALARDDSPLARLTRA 300 VIGAGLAGTAAAERLSARGWRI+LIDAGP+ ATRASGNH GLFMPALARDDSPLARLTRA Sbjct: 239 VIGAGLAGTAAAERLSARGWRIDLIDAGPEPATRASGNHAGLFMPALARDDSPLARLTRA 298 Query: 301 AFLFAAQRWQALGGVGLEEAAAIQGECCGILQFGRDAKQAWSFEQGARQWQYPDRYARWM 360 AFLFAAQRWQALGGVG+EE AAI GECCGILQFGRDAKQA SFEQGAR+W YP RYARWM Sbjct: 299 AFLFAAQRWQALGGVGMEEGAAILGECCGILQFGRDAKQAQSFEQGAREWDYPARYARWM 358 Query: 361 SAEETAAALGMATMGGGYFFPEAGWLHPPSVCRRMLAVAREQGEVATHFARAVSRLQREA 420 SA+ETA ALGM TMGGGYFFPEAGWL+PPSVCRRMLAVAR+ V +HF V RLQRE Sbjct: 359 SAQETADALGMPTMGGGYFFPEAGWLNPPSVCRRMLAVARQSNLVHSHFGCTVHRLQREG 418 Query: 421 GQWQARDAAGEVIAQAPVVIFAAGAQASALAQLAELPLNAVRGQVTHLPAAGFPDLPYAL 480 GQWQA D AGE IAQAPVVI AAGAQASAL A LPLNAVRGQVTHLPA GFP LP+AL Sbjct: 419 GQWQALDQAGESIAQAPVVILAAGAQASALPIAAALPLNAVRGQVTHLPAEGFPRLPFAL 478 Query: 481 CGDGYLTRPYAGQIALGASYDRFDDPNLRADSHADNLARLQHMLPQIARHVALPEATA-S 539 CGDGYLTR + G + +GA+YDRF DP LR DSHA+NL RLQHMLPQIA H LP A+A S Sbjct: 479 CGDGYLTRAHGGLVCMGATYDRFQDPALRVDSHAENLGRLQHMLPQIATHTHLPPASAPS 538 Query: 540 QPGRVGQRCIAPDRLPLVGALPEQEGLYSLLGYASRGLIWAPLMAELLAAMLEREPLPLP 599 GRVGQRCIAPDRLPLVGALP Q GLY LLGYASRGLIWAPLMAELLAAMLEREPLPLP Sbjct: 539 LQGRVGQRCIAPDRLPLVGALPGQAGLYGLLGYASRGLIWAPLMAELLAAMLEREPLPLP 598 Query: 600 RDLVAALDPARFKGVFAAELSAPNDPE 626 RDLVAALDPARF A++L P + E Sbjct: 599 RDLVAALDPARFGTTAASDLELPAELE 625 >gi|300310497|ref|YP_003774589.1| glycine/D-amino acid oxidase [Herbaspirillum seropedicae SmR1] Length = 433 Score = 61.2 bits (147), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 108/381 (28%), Positives = 148/381 (38%), Gaps = 32/381 (8%) Query: 228 PLQRDAQHPRHALVIGAGLAGTAAAERLSARGWRIELIDAGPQVATRASGNHGGLFMPAL 287 PLQ A++ ++GAG G + A L+ G + ++DA ASG +GG +P L Sbjct: 26 PLQASARY--DVAIVGAGYTGLSTALHLAQAGVSVCVLDAHAP-GWGASGRNGGQVIPGL 82 Query: 288 ARDDSPLARLTRAAF---LFAAQRWQALGGVGLEEAAAIQGEC--CGILQFGRDAKQAWS 342 D L + +A L AA A L I+ E G +Q K + Sbjct: 83 KYDPDQLRVMFGSAVADPLIAAIGSAADTVFDLIARHGIECEAQRAGWIQPTHSPKMMRA 142 Query: 343 FEQGARQWQYPDRYARWMSAEETAAALGMATMGGGYFFPEAGWLHPPSVCRRMLAVAREQ 402 E ARQW A+ M E +G GG+ AG LHP CR + A+ Sbjct: 143 LEARARQWMAEGAPAQLMDGAEVTRRIGTGAYVGGWKDERAGSLHPLKYCRGLAQAAQRL 202 Query: 403 GEVATHFARAVSRLQREAGQWQARDAAGEV---IAQAPVVIFAAGAQASALAQLAELPLN 459 G V H V+RL+R G W+ +GE I VV+ G L + + Sbjct: 203 G-VVIHGDTRVTRLERRQGGWRLHGPSGEQGPHIDAERVVLATNGYTDDLWPHLRQSVIA 261 Query: 460 AVRGQVTHL---PAAGFPDLPYA-LCGDG-----YLTRPYAGQIALGASYDRFDDPNLRA 510 A V PA G LP + D Y R G++ +G F +P A Sbjct: 262 ANSFIVATRPLPPALGASILPGGEVTSDSRRLLLYYRRDAQGRLLMGGR-GPFGEPQGPA 320 Query: 511 DSHADNLARLQHMLPQIARHVALPEATASQPGRVGQRCIAPDRLPLVGALPEQEGLYSLL 570 D A L+ + + +A E GRV I D LP V GL L Sbjct: 321 D-----FAHLERSVALLFPQLAGVEYEYRWSGRV---AITRDFLPHVHE--PAPGLSIAL 370 Query: 571 GYASRGLIWAPLMAELLAAML 591 GY RG+ A +M + LA L Sbjct: 371 GYNGRGIAMATMMGQRLAQRL 391 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.322 0.135 0.427 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,877,336 Number of extensions: 74485 Number of successful extensions: 352 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 345 Number of HSP's successfully gapped: 3 Length of query: 626 Length of database: 1,619,870 Length adjustment: 91 Effective length of query: 535 Effective length of database: 1,188,985 Effective search space: 636106975 Effective search space used: 636106975 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 133 (55.8 bits)