BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4647.p (329 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300314038|ref|YP_003778130.1| hypothetical protein Hsero_4761... 568 e-163 gi|300311184|ref|YP_003775276.1| acetyltransferase [Herbaspirill... 119 3e-28 >gi|300314038|ref|YP_003778130.1| hypothetical protein Hsero_4761 [Herbaspirillum seropedicae SmR1] Length = 326 Score = 568 bits (1465), Expect = e-163, Method: Compositional matrix adjust. Identities = 279/326 (85%), Positives = 296/326 (90%), Gaps = 1/326 (0%) Query: 1 MDYDGLHSPPRDQTIGQLRELSRKLVRELGFMRSTLAGSDLAPSAVHAIIEIGLRPGLQA 60 MD+DGL +PPR+QTI QLRELSRKLVRELGFMRSTLAGSDLAPSAVHAIIEIGLRPGLQA Sbjct: 1 MDFDGLQTPPREQTIRQLRELSRKLVRELGFMRSTLAGSDLAPSAVHAIIEIGLRPGLQA 60 Query: 61 RELGELLYLDKSNTSRQLVKLEALGLVRRSPVPGDGRAFSLALTEAGQALRKKIDKFATD 120 RELGE+LYLDKSNTSRQL KLEALGLVRRSP PGDGRAFSL LTEAGQ LRKKIDKFATD Sbjct: 61 RELGEVLYLDKSNTSRQLAKLEALGLVRRSPAPGDGRAFSLTLTEAGQVLRKKIDKFATD 120 Query: 121 QVSGALRRILPQDQQGLVRALALYSEALSRDNPNAVVPPGKAVA-TPLRSGYQPGCIGDI 179 QVS ALRRI+P+DQQGLVRALALYSEALSRDNPNAV + A PL GYQPGCIGDI Sbjct: 121 QVSAALRRIMPEDQQGLVRALALYSEALSRDNPNAVAGSARGSAEAPLAQGYQPGCIGDI 180 Query: 180 ASLHARYYAQAAGFGAFFEHKVASELGAFAQALPTPGKQLWTHAEQGRTLASIVIDGDLA 239 ASLHARYYA+AAGFG +FEHKVASELGAF Q+LP PGK +WTH E GRTLASIVIDGD+A Sbjct: 181 ASLHARYYAEAAGFGVYFEHKVASELGAFVQSLPAPGKAIWTHQEHGRTLASIVIDGDVA 240 Query: 240 SGMAHLRWFIVDDSLRGAGVGRRLLEQAMAFLDAHHFDCYLWTFRGLDAARHLYLSAGFE 299 SG+AHLRWFIVDDSLRG GVGRRLLEQAMA +DAHHFDCYLWTF+GLDAARHLYL AGF Sbjct: 241 SGLAHLRWFIVDDSLRGRGVGRRLLEQAMALVDAHHFDCYLWTFQGLDAARHLYLEAGFA 300 Query: 300 LAEESAGEQWGSRVVEQRYTRAARRK 325 LAEES GEQWGSRVVEQRY R AR++ Sbjct: 301 LAEESPGEQWGSRVVEQRYVRPARKR 326 >gi|300311184|ref|YP_003775276.1| acetyltransferase [Herbaspirillum seropedicae SmR1] Length = 163 Score = 119 bits (298), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 68/154 (44%), Positives = 82/154 (53%), Gaps = 2/154 (1%) Query: 167 LRSGYQPGCIGDIASLHARYYAQAAGFGAFFEHKVASELGAFAQALPTPGKQLWTHAEQG 226 +R GY PG IG +A LHA YY + FG +FE ++A+EL AF WT G Sbjct: 6 IRRGYLPGAIGRVAELHAAYYTENWSFGVYFEARIATELAAFMSRYDDARDGFWTATVHG 65 Query: 227 RTLASIVIDGDLASGM-AHLRWFIVDDSLRGAGVGRRLLEQAMAFLDAHHF-DCYLWTFR 284 R ++ IDG A A LRWFI + LRG GVG LL +A+ YLWTF Sbjct: 66 RIEGALTIDGQHAQEQGAWLRWFIASEKLRGRGVGDALLSEAVRCCAERDIASIYLWTFE 125 Query: 285 GLDAARHLYLSAGFELAEESAGEQWGSRVVEQRY 318 GL AAR LY GF EE G WG ++ EQRY Sbjct: 126 GLHAARTLYERHGFVRVEERIGSHWGVKLKEQRY 159 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.136 0.403 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,080,268 Number of extensions: 46327 Number of successful extensions: 164 Number of sequences better than 1.0e-08: 2 Number of HSP's gapped: 161 Number of HSP's successfully gapped: 2 Length of query: 329 Length of database: 1,619,870 Length adjustment: 86 Effective length of query: 243 Effective length of database: 1,212,660 Effective search space: 294676380 Effective search space used: 294676380 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)