BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4646.p
         (535 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300314037|ref|YP_003778129.1| FAD-dependent dehydrogenase [He...  1042   0.0  

>gi|300314037|ref|YP_003778129.1| FAD-dependent dehydrogenase
           [Herbaspirillum seropedicae SmR1]
          Length = 535

 Score = 1042 bits (2695), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 514/535 (96%), Positives = 529/535 (98%)

Query: 1   MLRISELTLPLNHTEDELNAAILDRLGIPADELMSFTLFRRSYDARKKTAITLNYTIDVE 60
           MLRISELTLPL+HTED+L+AAILDRLGI ADEL+SFTLFRRSYDARKK+AITLNYTIDV 
Sbjct: 1   MLRISELTLPLSHTEDQLHAAILDRLGIQADELLSFTLFRRSYDARKKSAITLNYTIDVA 60

Query: 61  VKDEPAVLARHAKTTNVGPTPDTSYHYVTRAPASLKKRPVVIGFGPCGLFAALILAEMGF 120
           +KDE AVLAR+AK  NVGPTPDTSYHYVTRAPA+LKKRPVVIGFGPCGLFAALILAEMGF
Sbjct: 61  LKDEAAVLARYAKARNVGPTPDTSYHYVTRAPATLKKRPVVIGFGPCGLFAALILAEMGF 120

Query: 121 NPLILERGKTVRERTKDTWGLWRQRELKPESNVQFGEGGAGTFSDGKLYSQVKDPKHYGR 180
           NP+ILERGKTVRERTKDTWGLWRQRELKPESNVQFGEGGAGTFSDGKLYSQVKDPKHYGR
Sbjct: 121 NPIILERGKTVRERTKDTWGLWRQRELKPESNVQFGEGGAGTFSDGKLYSQVKDPKHYGR 180

Query: 181 KVLAEFVAADAPPEIMYVSKPHIGTFRLVKMIQLMREKIEKLGGEFRFEQRVEDVLIEDG 240
           KVL+EFVAADAPPEIMYVSKPHIGTFRLVKMIQLMR+KIEKLGGEFRFEQRVEDVLIEDG
Sbjct: 181 KVLSEFVAADAPPEIMYVSKPHIGTFRLVKMIQLMRDKIEKLGGEFRFEQRVEDVLIEDG 240

Query: 241 KIRGLTLANGEQIEADHVVLAIGHSARDTFEMLYQRGVYIEAKPFSIGFRAEHPQSLIDK 300
           KIRGLTLA+GEQIEADHVVLAIGHSARDTFEMLY+RGVYIEAKPFSIGFRAEHPQSLIDK
Sbjct: 241 KIRGLTLASGEQIEADHVVLAIGHSARDTFEMLYERGVYIEAKPFSIGFRAEHPQSLIDK 300

Query: 301 CRFGPGAGHPILGAADYKLVHHASNGRSVYSFCMCPGGTVVAATSEPGRVVTNGMSQYSR 360
           CRFGP AGHPILGAADYKLVHHASNGRSVYSFCMCPGGTVVAATSEPGRVVTNGMSQYSR
Sbjct: 301 CRFGPSAGHPILGAADYKLVHHASNGRSVYSFCMCPGGTVVAATSEPGRVVTNGMSQYSR 360

Query: 361 NERNANSGIVVGISPADYPGHPLAGIAFQREWESRAYELGGGNYNAPGQLVGDFIANRPS 420
           NERNANSGIVVGISPADYPGHPLAGIAFQREWESRAYELGGGNYNAPGQLVGDFIANRPS
Sbjct: 361 NERNANSGIVVGISPADYPGHPLAGIAFQREWESRAYELGGGNYNAPGQLVGDFIANRPS 420

Query: 421 TQLGSVEPSYKPGVTLGDLNPSLPKYAIDAIREALPAFDKQIRGYSMHDAVLTGIETRTS 480
           TQLGSVEPSYKPGV+LGDLNPSLPKYAIDAIREALPAFDKQIRGYSMHDAVLTGIETRTS
Sbjct: 421 TQLGSVEPSYKPGVSLGDLNPSLPKYAIDAIREALPAFDKQIRGYSMHDAVLTGIETRTS 480

Query: 481 SPIRIKRDDHTLQSLNTQGLYPAGEGAGYAGGIMSAAIDGIRVAEALALDIVAQS 535
           SPIRIKRDDHTLQSLNT+GLYPAGEGAGYAGGIMSAAIDGIRVAEALALDIVAQS
Sbjct: 481 SPIRIKRDDHTLQSLNTKGLYPAGEGAGYAGGIMSAAIDGIRVAEALALDIVAQS 535


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.137    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,756,705
Number of extensions: 79559
Number of successful extensions: 236
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 236
Number of HSP's successfully gapped: 1
Length of query: 535
Length of database: 1,619,870
Length adjustment: 90
Effective length of query: 445
Effective length of database: 1,193,720
Effective search space: 531205400
Effective search space used: 531205400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 133 (55.8 bits)