BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4637.p
         (108 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300314027|ref|YP_003778119.1| hypothetical protein Hsero_4750...   125   7e-31

>gi|300314027|ref|YP_003778119.1| hypothetical protein Hsero_4750
           [Herbaspirillum seropedicae SmR1]
          Length = 108

 Score =  125 bits (314), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 57/82 (69%), Positives = 70/82 (85%)

Query: 27  GCANFSEVSAEHDDLYMVSATGVSYTMSIAALTSAARDKASAFCGKQQMQADLRQLIRGW 86
           GCA+ S++     D++MV+ATGVSYTMSI ALT+AA++KA  FCGKQ+M+ADLRQLIRGW
Sbjct: 26  GCASTSDIKVGEQDMFMVAATGVSYTMSIPALTAAAKEKAYDFCGKQKMKADLRQLIRGW 85

Query: 87  RPMQVELYFRCKPMGLSLQALL 108
           +PMQVELYFRC+P G SLQA L
Sbjct: 86  QPMQVELYFRCQPEGASLQARL 107


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.325    0.132    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 229,260
Number of extensions: 5881
Number of successful extensions: 31
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 31
Number of HSP's successfully gapped: 1
Length of query: 108
Length of database: 1,619,870
Length adjustment: 72
Effective length of query: 36
Effective length of database: 1,278,950
Effective search space: 46042200
Effective search space used: 46042200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 124 (52.4 bits)