BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4633.p (257 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310496|ref|YP_003774588.1| amino acid ABC transporter ATPa... 283 1e-77 gi|300311603|ref|YP_003775695.1| glutamine ABC transporter ATPas... 256 1e-69 gi|300309411|ref|YP_003773503.1| glutamine ABC transporter ATPas... 252 3e-68 gi|300313168|ref|YP_003777260.1| amino acid ABC transporter ATPa... 246 1e-66 gi|300313887|ref|YP_003777979.1| amino acid ABC transporter ATPa... 236 2e-63 >gi|300310496|ref|YP_003774588.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 242 Score = 283 bits (723), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 141/246 (57%), Positives = 179/246 (72%), Gaps = 8/246 (3%) Query: 9 MIQIRHLQKSFGEHVVLKDISIEIARGSVVAMIGPSGSGKSTLLRCLNLLTVPDRGSVRI 68 MI+++ + K FG H VLKD+S+ +A+G VV +IGPSGSGKST+LRC+N L +RG + I Sbjct: 1 MIEVKRISKCFGRHEVLKDVSLSVAQGEVVCLIGPSGSGKSTVLRCINGLESYERGDILI 60 Query: 69 GTRHFEFNGRKSHLPKERELAAFRARTGMVFQHFNLFPHMTALENVMEGMVTVLRTPKAE 128 + + +G H R R GMVFQ FNLFPH T LENV EG + V +A+ Sbjct: 61 DGQRVDRDGPDIH--------RLRTRVGMVFQRFNLFPHRTVLENVTEGPIYVNGLARAQ 112 Query: 129 ARAQAMALLQKVGLIERADMYPQKLSGGQKQRIAIARALAMQPDVMLFDEATSALDPELV 188 AR++AM+LL KVGL R D YP +LSGGQ+QR+AIAR+LAMQP+ +LFDE TSALDPELV Sbjct: 113 ARSEAMSLLDKVGLAARCDAYPAQLSGGQQQRVAIARSLAMQPEAILFDEPTSALDPELV 172 Query: 189 GEVLNVIRGLAADGMTMILVTHEIAFAREVADQVVFMRDGVVVEAGPPSQVIDHPREAAT 248 GEVL V+R LAADGMTMI+VTHE+ FAREVAD+V F+ G +VE+G +QV+ P+ A T Sbjct: 173 GEVLAVMRTLAADGMTMIVVTHEMGFAREVADRVCFLHSGSIVESGAAAQVLAEPQHART 232 Query: 249 QAFLSR 254 Q FL R Sbjct: 233 QDFLRR 238 >gi|300311603|ref|YP_003775695.1| glutamine ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 257 Score = 256 bits (654), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 138/247 (55%), Positives = 173/247 (70%), Gaps = 3/247 (1%) Query: 6 NQSMIQIRHLQKSFGEHVVLKDISIEIARGSVVAMIGPSGSGKSTLLRCLNLLTVPDRGS 65 + ++++ L+KSFG HVVLKD+ + +A VV +IGPSGSGKST LRCLN L + G+ Sbjct: 2 TEPIVEVSGLRKSFGAHVVLKDLDLSVAPSQVVVVIGPSGSGKSTFLRCLNGLEKAEGGT 61 Query: 66 VRIGTRHFEFNGRKSHLPKERELAAFRARTGMVFQHFNLFPHMTALENVMEGMVTVLRTP 125 V++ R GR + E L RA GMVFQ FNLFPH+T L+N+ + Sbjct: 62 VKVCGRPVVEGGR---MMPEAMLDLLRAEVGMVFQSFNLFPHLTVLDNITLAPTCLRGMS 118 Query: 126 KAEARAQAMALLQKVGLIERADMYPQKLSGGQKQRIAIARALAMQPDVMLFDEATSALDP 185 + A+ QA+ LL+KVGL +A YP LSGGQKQR+AIARALAM+P VMLFDE TSALDP Sbjct: 119 RKAAQQQALQLLEKVGLAHKAKAYPGTLSGGQKQRVAIARALAMEPQVMLFDEPTSALDP 178 Query: 186 ELVGEVLNVIRGLAADGMTMILVTHEIAFAREVADQVVFMRDGVVVEAGPPSQVIDHPRE 245 ELVGEVL VIR LAA+GMTMI+VTHE+ FAREVAD VV M G +VEAGPP + P++ Sbjct: 179 ELVGEVLQVIRALAAEGMTMIIVTHEMGFAREVADVVVVMDHGSIVEAGPPGAIFTAPQQ 238 Query: 246 AATQAFL 252 A T++FL Sbjct: 239 ARTRSFL 245 >gi|300309411|ref|YP_003773503.1| glutamine ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 240 Score = 252 bits (643), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 134/246 (54%), Positives = 170/246 (69%), Gaps = 8/246 (3%) Query: 9 MIQIRHLQKSFGEHVVLKDISIEIARGSVVAMIGPSGSGKSTLLRCLNLLTVPDRGSVRI 68 MI++ LQK FG+ +L+ I EI VV +IGPSGSGKST LRCLN L G + I Sbjct: 1 MIKVNQLQKRFGQAHILRGIDCEIRAREVVCVIGPSGSGKSTFLRCLNGLEEVSDGDIFI 60 Query: 69 GTRHFEFNGRKSHLPKERELAAFRARTGMVFQHFNLFPHMTALENVMEGMVTVLRTPKAE 128 G K + PK L A RA GMVFQ FNLFPHMT LEN++ + V + + E Sbjct: 61 -------EGVKLNDPK-VNLNALRAELGMVFQRFNLFPHMTVLENLIMAPMQVKKLSRRE 112 Query: 129 ARAQAMALLQKVGLIERADMYPQKLSGGQKQRIAIARALAMQPDVMLFDEATSALDPELV 188 A A LLQKVGL+++ D +P +LSGGQ+QR+AIARALAM+P VMLFDE TSALDPELV Sbjct: 113 AVLVAEKLLQKVGLLDKIDAFPNQLSGGQQQRVAIARALAMEPKVMLFDEPTSALDPELV 172 Query: 189 GEVLNVIRGLAADGMTMILVTHEIAFAREVADQVVFMRDGVVVEAGPPSQVIDHPREAAT 248 GEVL V++ LA +GMTM++VTHE+ FAREV+D+V+F+ GV++E GPP QV+ P T Sbjct: 173 GEVLTVMKQLAEEGMTMVVVTHEMGFAREVSDRVLFIDQGVIMEEGPPQQVLGDPHHERT 232 Query: 249 QAFLSR 254 + FL + Sbjct: 233 RDFLRK 238 >gi|300313168|ref|YP_003777260.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 244 Score = 246 bits (628), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 121/246 (49%), Positives = 166/246 (67%), Gaps = 7/246 (2%) Query: 8 SMIQIRHLQKSFGEHVVLKDISIEIARGSVVAMIGPSGSGKSTLLRCLNLLTVPDRGSVR 67 ++++I+ L KSFG + VL +S+++ +G +VA+IG SGSGKSTLLRCLN L D G ++ Sbjct: 3 AIVKIKDLHKSFGSNKVLNGVSLDVQKGQMVAIIGKSGSGKSTLLRCLNGLEKVDAGDIQ 62 Query: 68 IGTRHFEFNGRKSHLPKERELAAFRARTGMVFQHFNLFPHMTALENVMEGMVTVLRTPKA 127 + G H P + L R + G+VFQ +NLFPH+T N+ + T+ + Sbjct: 63 VC-------GHDIHHPDKLNLRELRKQVGIVFQSYNLFPHLTVERNITLALTTIKKMSTE 115 Query: 128 EARAQAMALLQKVGLIERADMYPQKLSGGQKQRIAIARALAMQPDVMLFDEATSALDPEL 187 +A+ A +LQ VGL + D YP++LSGGQ QR+AIAR+LAM P++MLFDE TSALDPEL Sbjct: 116 QAKTIAHKVLQLVGLENKKDAYPEQLSGGQAQRVAIARSLAMAPELMLFDEVTSALDPEL 175 Query: 188 VGEVLNVIRGLAADGMTMILVTHEIAFAREVADQVVFMRDGVVVEAGPPSQVIDHPREAA 247 EVL V+ LA GMTM+LVTHE+AFAR++AD +VFM G V E GPP ++ HP+ A Sbjct: 176 TAEVLKVMEDLARGGMTMVLVTHEMAFARKLADVLVFMHQGQVWEIGPPDELFSHPKTAE 235 Query: 248 TQAFLS 253 Q F+S Sbjct: 236 LQKFVS 241 >gi|300313887|ref|YP_003777979.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 264 Score = 236 bits (601), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 128/252 (50%), Positives = 176/252 (69%), Gaps = 9/252 (3%) Query: 2 NQEHNQSMIQIRHLQKSFGEHVVLKDISIEIARGSVVAMIGPSGSGKSTLLRCLNLLTVP 61 ++E ++++ + KSFG++ VLK +S E+ARG ++A+IG SGSGKST LRC++ L Sbjct: 19 SREPQPVIVKLDQVYKSFGDNQVLKGVSFEVARGEMIAIIGASGSGKSTALRCIDRLETI 78 Query: 62 DRGSVRIGTRHFEFNGRKSHLPKERELAAFRARTGMVFQHFNLFPHMTALENVMEGMVTV 121 D GS+ E G + P + +L R G+VFQ +NLFPH+ LENVM + V Sbjct: 79 DSGSI-------EVAGIRVDDP-QVDLHKLRREVGIVFQSYNLFPHLNVLENVMLALRHV 130 Query: 122 LRTPKAEARAQAMALLQKVGLIERADMYPQKLSGGQKQRIAIARALAMQPDVMLFDEATS 181 + KAEAR A+A L +VGL E+A+ YP++LSGGQ+QR+AIAR+LAM P VMLFDE TS Sbjct: 131 KQQDKAEARRVALAALAQVGLDEKANAYPEQLSGGQQQRVAIARSLAMAPKVMLFDEVTS 190 Query: 182 ALDPELVGEVLNVIRGLAADGMTMILVTHEIAFAREVADQVVFMRDGVVVEAGPPSQVID 241 ALDP+L GEVL V+ LAA+GMTM+LVTHE+ FA+ VAD++++M G V E G P +++D Sbjct: 191 ALDPQLTGEVLRVMEDLAANGMTMLLVTHEMNFAKRVADRIIYMHQGRVWEVG-PGEMLD 249 Query: 242 HPREAATQAFLS 253 HP QAFL+ Sbjct: 250 HPYTPELQAFLA 261 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.323 0.135 0.378 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 752,392 Number of extensions: 29549 Number of successful extensions: 551 Number of sequences better than 1.0e-08: 132 Number of HSP's gapped: 300 Number of HSP's successfully gapped: 145 Length of query: 257 Length of database: 1,619,870 Length adjustment: 83 Effective length of query: 174 Effective length of database: 1,226,865 Effective search space: 213474510 Effective search space used: 213474510 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 129 (54.3 bits)